Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 5.4e-226 787.3 400 100.0
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.4e-210 735.3 401 94.3
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 4.2e-170 601.7 419 75.2
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 4.5e-164 581.6 410 75.9
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 1.7e-163 579.7 421 73.4
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.6e-161 573.2 421 72.4
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 3.7e-158 562.0 477 65.2
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 3.0e-91 339.7 439 49.0
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.6e-89 332.8 439 49.2
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 6.9e-88 328.6 430 48.6
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 5.6e-82 308.9 445 44.0
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.4e-77 293.5 443 45.1
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 2.1e-76 290.4 420 47.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 7.9e-76 288.5 444 44.6
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 7.4e-74 282.0 444 42.8
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.8e-72 277.3 445 43.1
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.4e-71 273.1 487 40.9
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.4e-71 273.1 487 40.9
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 4.5e-71 272.7 422 44.5
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 5.8e-71 272.3 436 43.8
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.1e-69 268.1 489 40.5
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 4.2e-69 266.2 432 42.1
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 7.1e-69 265.4 436 41.1
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 2.3e-67 260.4 420 41.9
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.0e-67 260.0 461 41.9
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 6.7e-67 258.8 450 42.4
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 2.5e-66 256.9 465 40.9
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 7.4e-66 255.4 467 39.2
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.3e-65 254.6 478 37.2
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 2.8e-65 253.4 326 50.0
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 6.3e-65 252.3 433 41.6
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.4e-64 251.1 449 40.5
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 2.0e-63 247.3 447 40.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 5.9e-63 245.7 354 44.9
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.8e-62 243.0 425 41.4
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 5.0e-62 242.7 572 35.3
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 8.5e-62 241.9 455 38.9
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 3.2e-61 240.0 526 38.2
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 4.2e-61 239.6 431 42.2
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 2.1e-60 237.3 388 41.8
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 4.6e-60 236.1 407 40.3
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 6.1e-60 235.7 415 39.8
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 7.9e-60 235.3 492 35.0
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 7.9e-60 235.3 387 42.1
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.0e-59 235.0 448 39.7
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 2.3e-59 233.8 432 39.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.0e-59 233.4 372 42.2
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.5e-58 231.1 473 38.3
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 4.3e-58 229.6 433 42.3
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 3.7e-57 226.5 425 41.2
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 5.3e-56 222.6 449 41.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 5.9e-55 219.2 480 36.9
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 5.9e-55 219.2 487 35.1
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.9e-53 214.2 492 36.6
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 3.2e-53 213.4 429 39.2
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 9.4e-53 211.8 420 41.0
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 3.0e-51 206.8 486 33.7
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 3.0e-51 206.8 318 40.9
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 5.1e-51 206.1 505 34.5
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 6.7e-51 205.7 476 35.1
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.0e-50 204.1 477 34.0
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 9.7e-50 201.8 429 38.7
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.7e-49 201.1 508 35.6
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 3.7e-49 199.9 514 34.8
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.3e-49 199.1 471 35.0
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 8.2e-49 198.7 519 35.6
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 2.4e-48 197.2 343 40.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 5.3e-48 196.1 435 38.4
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 6.9e-48 195.7 439 37.6
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.5e-47 194.5 463 35.2
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.0e-47 194.1 459 36.2
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.0e-47 194.1 444 36.7
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 2.6e-47 193.7 440 36.8
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 3.4e-47 193.4 519 33.5
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 5.9e-47 192.6 401 34.4
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 1.0e-46 191.8 501 35.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.0e-46 191.8 439 37.4
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 3.8e-46 189.9 321 41.1
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 3.2e-45 186.8 488 34.2
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 5.5e-45 186.0 550 31.8
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 2.1e-44 184.1 524 31.9
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 2.1e-44 184.1 524 31.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.1e-44 184.1 415 36.9
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 4.7e-44 183.0 447 34.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 7.9e-44 182.2 503 32.2
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.0e-43 181.8 419 36.0
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 3.9e-43 179.9 284 41.2
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 3.9e-43 179.9 465 32.7
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 6.7e-43 179.1 463 33.9
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 8.8e-43 178.7 475 33.5
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 1.1e-42 178.3 270 42.6
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 2.2e-41 174.1 459 34.6
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.7e-38 164.5 250 43.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 2.2e-38 164.1 431 33.6
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 4.2e-37 159.8 516 32.9
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 9.4e-37 158.7 358 32.4
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 4.0e-35 153.3 524 32.6
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 5.7e-34 149.4 521 30.3
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 5.7e-34 149.4 521 30.3
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 9.7e-34 148.7 326 36.2
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.7e-33 147.9 524 31.1
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.2e-33 147.5 354 35.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 6.3e-33 146.0 521 29.8
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.3e-30 138.3 295 36.6
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 7.2e-29 132.5 413 34.1
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 4.7e-28 129.8 425 33.4
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 4.0e-27 126.7 391 29.7
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 4.8e-25 119.8 422 31.5
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.5e-23 113.6 403 28.0
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 4.5e-23 113.2 374 29.7
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 5.0e-22 109.8 578 27.5
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.8e-19 101.3 132 45.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 8.8e-19 99.0 162 41.4
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 1.5e-18 98.2 464 27.4
FAN02G3419 Fragaria x ananassa HOM05D012998 ORTHO05D025560 1.8e-08 64.7 98 43.9
FAN13G1116 Fragaria x ananassa HOM05D012998 ORTHO05D025560 3.2e-08 63.9 98 42.9
FvH4_5g03070 Fragaria vesca HOM05D012998 ORTHO05D007556 5.4e-08 63.2 91 42.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.6e-07 61.6 126 38.9
FAN07G1843 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.0e-07 61.2 131 38.2
FvH4_6g06532 Fragaria vesca HOM05D012998 ORTHO05D025560 2.7e-07 60.8 128 36.7
Rhsim04G0033600 Rhododendron simsii HOM05D000945 ORTHO05D007556 3.0e-06 57.4 74 48.6


User provided reference genes

Program Settings