Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-191 673.3 357 100.0
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.2e-170 602.4 381 85.3
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.2e-161 572.0 360 81.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.1e-160 569.3 360 80.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.4e-156 556.6 360 79.4
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.5e-147 526.6 337 81.6
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.3e-127 460.3 369 64.8
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.3e-125 453.8 370 64.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.2e-125 453.0 370 63.8
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.8e-125 452.6 370 63.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.8e-116 423.3 356 62.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.8e-109 399.4 369 55.0
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.6e-104 383.6 370 53.5
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.7e-104 382.9 368 53.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.6e-104 382.5 322 64.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.1e-104 381.7 370 52.7
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 6.1e-104 381.7 367 54.0
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.0e-103 379.4 367 52.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 6.7e-103 378.3 370 50.8
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.3e-102 375.9 370 52.7
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.7e-102 375.2 373 51.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.5e-102 374.8 370 52.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 9.7e-102 374.4 367 53.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 9.7e-102 374.4 370 53.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.2e-101 373.2 367 52.9
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.7e-101 372.5 370 50.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 3.7e-101 372.5 368 51.1
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.3e-101 371.7 375 51.5
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 6.3e-101 371.7 372 50.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.1e-100 370.9 367 52.0
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.8e-100 370.2 367 51.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 9.1e-100 367.9 413 48.4
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.2e-99 367.5 371 50.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.6e-99 367.1 370 51.4
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.6e-99 367.1 372 51.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.0e-99 366.7 369 51.2
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.0e-99 366.7 367 51.2
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.7e-99 366.3 250 75.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 3.5e-99 365.9 369 52.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 5.9e-99 365.2 368 50.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.7e-98 363.6 366 51.4
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.9e-98 362.8 369 51.5
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.9e-98 362.8 370 49.2
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.8e-98 362.5 372 49.5
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.8e-98 362.5 370 51.6
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 8.5e-98 361.3 357 50.4
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.5e-98 361.3 367 49.9
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.9e-97 360.1 369 50.9
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.9e-97 360.1 371 50.7
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.2e-97 359.0 374 50.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.2e-97 359.0 371 50.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 7.2e-97 358.2 369 49.6
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.2e-96 357.5 368 51.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 4.7e-96 355.5 367 48.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.7e-96 355.5 361 51.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 6.1e-96 355.1 375 49.9
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.8e-95 353.6 376 50.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.8e-95 353.6 376 50.8
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.3e-95 353.2 371 49.9
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.3e-95 353.2 371 49.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.0e-95 352.8 379 49.6
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 4.0e-95 352.4 379 49.6
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 5.2e-95 352.1 374 49.5
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.2e-95 352.1 370 48.4
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 6.8e-95 351.7 375 50.7
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 6.8e-95 351.7 376 50.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 8.8e-95 351.3 372 50.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.2e-94 350.9 375 51.2
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.2e-94 350.9 376 50.5
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-94 350.5 380 49.2
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 3.4e-94 349.4 376 50.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.4e-94 349.4 371 49.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 4.4e-94 349.0 364 48.4
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 5.7e-94 348.6 368 49.5
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 7.5e-94 348.2 372 50.5
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 7.5e-94 348.2 377 50.4
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 9.8e-94 347.8 373 49.1
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 9.8e-94 347.8 367 49.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 9.8e-94 347.8 370 48.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-93 347.4 372 48.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.3e-93 345.1 383 49.6
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 8.3e-93 344.7 372 49.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 8.3e-93 344.7 360 51.7
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-92 344.4 370 47.6
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.1e-92 342.4 370 47.3
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 9.1e-92 341.3 349 51.9
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.5e-91 339.3 354 52.8
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 4.5e-91 339.0 374 49.2
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 7.7e-91 338.2 376 48.9
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 5.0e-90 335.5 378 48.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 6.5e-90 335.1 372 50.3
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 8.5e-90 334.7 348 49.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.2e-89 332.4 402 46.5
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.6e-88 330.5 342 50.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.8e-87 327.0 371 53.4
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.8e-87 324.7 367 46.3
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.8e-87 324.7 367 46.3
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.6e-86 323.2 371 47.4
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.4e-86 322.4 370 45.7
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.2e-85 320.1 356 47.8
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 3.7e-85 319.3 350 48.9
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.1e-84 317.8 354 48.9
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-84 316.2 354 49.2
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-83 314.3 371 46.6
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 5.0e-82 308.9 375 46.4
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.5e-81 306.6 321 50.8
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.3e-81 305.8 389 44.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.2e-80 304.3 340 48.8
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.6e-80 302.8 357 45.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 5.2e-79 298.9 359 45.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.0e-78 297.0 326 46.9
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 4.4e-78 295.8 387 42.4
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.7e-77 293.9 368 42.1
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 4.9e-77 292.4 360 44.2
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 6.4e-77 292.0 371 43.7
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.1e-76 291.2 324 48.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.2e-76 289.7 332 48.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.9e-74 282.7 329 45.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.5e-73 280.8 303 49.8
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.6e-73 278.9 300 49.0
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.8e-72 276.6 335 45.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.1e-71 273.1 370 40.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.5e-62 244.2 288 47.2
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.4e-62 243.0 374 37.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.7e-61 240.7 407 36.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 6.4e-61 238.8 336 40.5
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 1.3e-58 231.1 298 47.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 9.9e-54 214.9 385 32.5
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.1e-52 211.5 478 32.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.1e-51 207.2 196 55.6
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-50 204.9 241 46.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 4.3e-49 199.5 330 37.6
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.4e-47 193.7 275 43.6
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.6e-46 190.3 283 41.7
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.1e-44 184.9 191 46.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.4e-44 182.6 231 45.9
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.8e-40 170.2 259 40.5
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.2e-40 169.1 383 28.7
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 9.0e-39 165.2 215 42.8
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.8e-37 159.8 147 53.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.9e-33 147.5 138 45.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.3e-33 146.7 226 40.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.6e-32 144.4 242 39.7
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.4e-31 141.4 115 54.8
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.6e-22 110.5 429 23.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.0e-21 108.6 71 66.2
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 3.9e-18 96.7 162 34.6
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.1e-18 96.3 145 42.8
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.1e-11 72.8 193 30.6
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.5e-09 68.2 73 49.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 7.4e-09 65.9 42 66.7


User provided reference genes

Program Settings