Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 2216.4 1126 100.0
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 2030.8 1073 97.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1997.6 1073 93.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1996.5 1073 93.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1995.7 1073 93.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1989.2 1073 93.8
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1778.1 1085 82.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1772.3 1083 82.8
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1753.4 1079 81.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1107 79.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1745.3 1081 81.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1084 81.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1742.2 1082 80.8
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1730.3 1113 78.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1730.3 1073 80.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1090 79.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1089 78.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1718.4 1087 79.5
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1077 80.3
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1090 78.7
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1101 78.2
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1704.9 1090 78.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1703.0 1102 78.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1702.2 1090 78.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1090 78.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1090 78.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1699.5 1082 78.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1699.1 1087 78.7
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1697.6 1086 78.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1694.5 1085 78.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1083 78.1
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1085 78.3
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1091 78.5
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1686.0 1091 77.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1090 78.0
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1085 77.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1093 78.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1679.5 1112 77.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1676.4 1084 77.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1096 77.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1081 77.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1105 76.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1660.2 1067 77.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1099 76.8
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1086 76.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1085 77.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1087 76.6
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1066 78.0
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1086 76.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1086 75.5
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1638.6 1101 75.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1078 75.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1084 76.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1084 75.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1156 73.0
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1082 76.3
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1632.5 1099 75.4
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1632.1 1084 76.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1118 74.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1084 75.4
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1028 78.4
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1624.0 1112 74.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1074 76.4
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1007 78.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1170 72.1
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1220 69.6
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1199 70.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1089 74.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1602.8 1081 75.0
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1083 75.1
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1086 74.0
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1065 74.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1075 74.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1590.9 1065 74.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1071 73.9
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1071 74.5
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1065 74.1
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1075 74.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1074 73.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1074 74.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1582.0 1074 74.2
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1075 74.3
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1082 73.6
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1082 73.1
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1074 73.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1575.8 1074 73.8
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1006 77.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1081 73.2
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1085 72.6
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1570.8 1076 73.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1568.1 1071 73.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1567.0 1076 73.4
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1563.1 1118 71.4
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1562.4 1070 73.2
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1560.8 1126 71.0
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1557.0 1082 72.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1554.7 1075 73.3
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1553.1 1102 71.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1548.5 1077 72.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1077 72.1
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1541.9 1083 71.9
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1541.2 1077 71.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1539.6 1072 72.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 1152 68.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1531.9 1028 74.5
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1503.0 1007 75.3
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1489.9 969 75.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1484.2 1116 68.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1479.2 869 83.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1459.5 1096 70.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1449.9 914 78.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1445.6 1051 68.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1426.0 1027 68.0
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1401.0 1098 67.7
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1400.2 1098 67.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1365.1 957 69.9
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1343.2 748 91.6
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1298.5 801 79.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1291.2 1026 63.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1193.7 1069 58.7
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1184.1 845 71.8
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1166.0 750 78.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1102.0 1021 54.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1095.9 1028 54.2
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1094.0 999 56.0
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1085.5 722 74.9
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.8e-303 1046.2 739 71.6
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.3e-277 960.3 880 60.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 8.2e-272 941.0 876 56.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.3e-269 933.7 777 60.4
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.3e-263 911.8 582 74.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.2e-252 875.5 596 75.7
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 4.1e-247 859.0 967 46.6
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.8e-216 756.1 671 57.8
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.4e-208 728.4 646 60.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.9e-205 719.5 445 80.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.3e-204 716.5 756 52.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.0e-181 641.7 429 75.3
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.0e-176 622.9 508 66.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.9e-170 602.4 399 77.2
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-169 600.5 532 61.7
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.4e-169 600.1 408 73.3
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.7e-163 581.3 472 66.3
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 8.0e-158 562.4 1029 36.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.2e-150 538.5 393 66.9
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 6.3e-147 526.2 347 79.0
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 4.1e-130 470.3 393 62.6
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.3e-128 464.5 329 68.4
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.5e-127 461.1 309 72.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.4e-109 402.1 954 31.4
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.2e-106 389.4 307 69.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.1e-104 383.6 943 29.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.9e-99 367.1 952 28.3
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.6e-97 362.1 227 78.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-87 328.6 908 29.4
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-79 302.8 154 89.0
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 7.2e-58 230.3 873 23.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 9.4e-50 203.4 332 35.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 7.9e-49 200.3 310 42.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 7.9e-49 200.3 222 48.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.7e-46 192.6 220 53.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 8.2e-46 190.3 124 76.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.6e-44 185.3 170 57.1
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.5e-42 178.7 151 68.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.2e-42 178.3 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 7.4e-39 167.2 273 38.1
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.1e-37 161.8 460 27.8
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.1e-37 161.4 163 55.8
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 7.0e-37 160.6 125 65.6
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 7.2e-34 150.6 149 54.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 6.1e-33 147.5 163 44.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 5.3e-29 134.4 430 26.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 6.1e-25 120.9 111 54.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 4.8e-22 111.3 296 26.4
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 4.8e-22 111.3 81 64.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-17 95.5 83 60.2
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 6.8e-16 90.9 145 46.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.7e-12 79.0 55 63.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 5.9e-12 77.8 56 64.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.1e-09 69.3 48 64.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 8.0e-09 67.4 45 71.1
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 8.9e-08 63.9 166 36.7
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-07 62.8 77 45.5


User provided reference genes

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