Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001895g0040 Nicotiana tabacum HOM05D000157 ORTHO05D008998 1.7e-56 222.2 101 100.0
Nitab4.5_0008210g0040 Nicotiana tabacum HOM05D000157 ORTHO05D008998 2.3e-40 168.7 99 76.8
Nitab4.5_0008210g0050 Nicotiana tabacum HOM05D000086 ORTHO05D000311 8.7e-32 140.2 100 63.0
Nitab4.5_0001895g0030 Nicotiana tabacum HOM05D000086 ORTHO05D008998 3.7e-30 134.8 99 61.6
Peaxi162Scf00745g00065 Petunia axillaris HOM05D000086 ORTHO05D001065 5.0e-27 124.4 100 58.0
PGSC0003DMG400001708 Solanum tuberosum HOM05D000086 ORTHO05D008998 2.1e-25 119.0 102 55.9
Sopen01g035310 Solanum pennellii HOM05D000157 ORTHO05D001065 4.6e-25 117.9 100 56.0
PGSC0003DMG400001707 Solanum tuberosum HOM05D000086 ORTHO05D001065 5.1e-24 114.4 101 52.5
Solyc01g088440.2 Solanum lycopersicum HOM05D000086 ORTHO05D001065 8.2e-22 107.1 101 49.5
Peaxi162Scf00745g00067 Petunia axillaris HOM05D000157 ORTHO05D008998 1.4e-21 106.3 99 49.5
Sopen01g035300 Solanum pennellii HOM05D000086 ORTHO05D008998 3.1e-21 105.1 101 49.5
Solyc01g088450.2 Solanum lycopersicum HOM05D000086 ORTHO05D000311 4.5e-20 101.3 82 62.2
Sopen01g035320 Solanum pennellii HOM05D000086 ORTHO05D000311 4.5e-20 101.3 82 62.2
PGSC0003DMG400001706 Solanum tuberosum HOM05D000086 ORTHO05D008998 4.5e-20 101.3 103 47.6
Peaxi162Scf00745g00054 Petunia axillaris HOM05D000157 ORTHO05D008998 9.4e-18 93.6 79 55.7
Peaxi162Scf00745g00052 Petunia axillaris HOM05D000157 ORTHO05D008998 3.6e-17 91.7 85 54.1
PGSC0003DMG400001677 Solanum tuberosum HOM05D000086 ORTHO05D000311 6.1e-17 90.9 70 61.4
Peaxi162Scf00103g00204 Petunia axillaris HOM05D000086 ORTHO05D008998 4.5e-12 74.7 73 47.9
PGSC0003DMG400017012 Solanum tuberosum HOM05D000086 ORTHO05D008998 1.3e-11 73.2 82 50.0
Os06g0534900 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 2.3e-08 62.4 50 54.0
Zm00001eb290630 Zea mays HOM05D000440 ORTHO05D000295 5.7e-07 57.8 58 39.7
HPP92_025404 Vanilla planifolia HOM05D000440 ORTHO05D000295 7.5e-07 57.4 69 39.1
arahy.Tifrunner.gnm1.ann1.2P0YEY Arachis hypogaea HOM05D001172 ORTHO05D001128 9.7e-07 57.0 63 36.5
arahy.Tifrunner.gnm1.ann1.B7DDIS Arachis hypogaea HOM05D001172 ORTHO05D001128 9.7e-07 57.0 63 36.5
Gohir.A11G315600 Gossypium hirsutum HOM05D000354 ORTHO05D000747 9.7e-07 57.0 48 43.8
Gohir.D11G332600 Gossypium hirsutum HOM05D000354 ORTHO05D000747 9.7e-07 57.0 48 43.8
Mapoly0001s0307 Marchantia polymorpha HOM05D001172 ORTHO05D001128 9.7e-07 57.0 56 42.9
Os06g0534950 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D008998 9.7e-07 57.0 59 42.4
A03p40830 Brassica napus HOM05D000440 ORTHO05D000295 2.2e-06 55.8 51 41.2
BraA03t13241Z Brassica rapa HOM05D000440 ORTHO05D000295 2.2e-06 55.8 51 41.2
Zm00001eb109400 Zea mays HOM05D000086 ORTHO05D000295 2.2e-06 55.8 49 44.9
Potri.001G435800 Populus trichocarpa HOM05D001172 ORTHO05D001128 2.8e-06 55.5 72 33.3
MSTRG.28127 Avicennia marina HOM05D000157 ORTHO05D008998 3.7e-06 55.1 45 53.3
MSTRG.28128 Avicennia marina HOM05D000157 ORTHO05D008998 3.7e-06 55.1 34 64.7
MELO3C029463.2 Cucumis melo HOM05D000157 ORTHO05D001065 3.7e-06 55.1 55 41.8
MELO3C035276.2 Cucumis melo HOM05D000157 ORTHO05D001065 3.7e-06 55.1 55 43.6
MD14G1203800 Malus domestica HOM05D001172 ORTHO05D001128 3.7e-06 55.1 63 36.5
Os03g0398600 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 3.7e-06 55.1 57 43.9
Atru.chr2.3410 Acer truncatum HOM05D001172 ORTHO05D001128 4.8e-06 54.7 49 40.8
ATR0579G040 Amborella trichopoda HOM05D000440 ORTHO05D000295 4.8e-06 54.7 45 46.7
EL10Ac6g15263 Beta vulgaris HOM05D000440 ORTHO05D000295 4.8e-06 54.7 48 41.7
CiPaw.12G129900 Carya illinoinensis HOM05D001172 ORTHO05D001128 4.8e-06 54.7 41 48.8
MELO3C020632.2 Cucumis melo HOM05D000157 ORTHO05D000311 4.8e-06 54.7 40 47.5
Gorai.007G363500 Gossypium raimondii HOM05D000354 ORTHO05D000747 4.8e-06 54.7 48 41.7
MD03G1200700 Malus domestica HOM05D001172 ORTHO05D001128 4.8e-06 54.7 41 46.3
Rhsim01G0010400 Rhododendron simsii HOM05D000157 ORTHO05D001065 4.8e-06 54.7 43 60.5
Zm00001eb279770 Zea mays HOM05D001172 ORTHO05D001128 4.8e-06 54.7 31 67.7
MSTRG.6919 Avicennia marina HOM05D001172 ORTHO05D001128 6.3e-06 54.3 53 43.4
Thhalv10023141m.g Eutrema salsugineum HOM05D000440 ORTHO05D000295 6.3e-06 54.3 56 41.1
HPP92_027593 Vanilla planifolia HOM05D001172 ORTHO05D001128 6.3e-06 54.3 62 35.5
Zm00001eb238430 Zea mays HOM05D001172 ORTHO05D000747 6.3e-06 54.3 43 48.8
Ah.14g088030 Amaranthus hybridus HOM05D001172 ORTHO05D001128 8.2e-06 53.9 90 28.9
ATR0329G043 Amborella trichopoda HOM05D000086 ORTHO05D000431 8.2e-06 53.9 55 41.8
AL3G32140 Arabidopsis lyrata HOM05D000440 ORTHO05D000295 8.2e-06 53.9 51 39.2
AT4G11360 Arabidopsis thaliana HOM05D000341 ORTHO05D000557 8.2e-06 53.9 50 44.0
arahy.Tifrunner.gnm1.ann1.CUW7MQ Arachis hypogaea HOM05D000086 ORTHO05D000431 8.2e-06 53.9 81 39.5
C03p49720 Brassica napus HOM05D000440 ORTHO05D000295 8.2e-06 53.9 51 39.2
MELO3C035277.2 Cucumis melo HOM05D000086 ORTHO05D001065 8.2e-06 53.9 55 43.6
Eucgr.E04311 Eucalyptus grandis HOM05D000440 ORTHO05D000295 8.2e-06 53.9 50 44.0
Eucgr.F00762 Eucalyptus grandis HOM05D001172 ORTHO05D001128 8.2e-06 53.9 35 57.1
Hma1.2p1_1440F.1_g283580 Hydrangea macrophylla HOM05D000086 ORTHO05D008998 8.2e-06 53.9 66 39.4
QL08p010134 Quercus lobata HOM05D001172 ORTHO05D001128 8.2e-06 53.9 50 40.0
THA.LOC104802512 Tarenaya hassleriana HOM05D000086 ORTHO05D008998 8.2e-06 53.9 69 34.8
Zm00001eb146800 Zea mays HOM05D000440 ORTHO05D000295 8.2e-06 53.9 70 38.6


User provided reference genes

Program Settings