Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 5.4e-187 657.5 335 100.0
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.7e-156 556.2 333 87.7
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 4.2e-147 525.0 311 85.9
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.7e-140 503.1 311 82.0
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 1.1e-139 500.4 311 81.7
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.4e-139 500.0 311 81.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 9.7e-128 460.7 311 77.8
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 6.7e-113 411.4 310 65.2
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 7.0e-110 401.4 299 66.2
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 5.9e-109 398.3 300 65.3
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 5.9e-109 398.3 300 67.7
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 3.2e-107 392.5 310 64.2
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.2e-106 390.6 300 62.7
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 2.3e-105 386.3 299 60.9
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 3.0e-105 386.0 299 62.9
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 6.3e-103 378.3 300 61.3
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 1.1e-102 377.5 309 61.2
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 1.8e-102 376.7 299 64.9
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 9.1e-102 374.4 301 62.5
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 2.7e-101 372.9 298 59.1
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 5.9e-101 371.7 298 62.8
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 5.0e-100 368.6 310 61.3
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 5.0e-100 368.6 301 61.8
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 5.0e-100 368.6 301 59.8
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 8.6e-100 367.9 310 59.7
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 1.1e-99 367.5 303 60.1
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 2.5e-99 366.3 299 61.9
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 4.2e-99 365.5 309 57.9
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.1e-98 363.2 300 60.7
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 6.1e-98 361.7 300 61.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.0e-97 360.9 300 61.7
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 8.8e-97 357.8 310 60.3
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 8.8e-97 357.8 297 60.3
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.5e-96 357.1 300 60.3
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 2.6e-96 356.3 310 58.1
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 7.5e-96 354.8 310 57.7
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 9.8e-96 354.4 300 61.0
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 9.8e-96 354.4 298 59.7
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.3e-95 354.0 292 62.0
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 1.3e-95 354.0 298 59.4
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.7e-95 353.6 298 57.0
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.8e-95 352.8 310 57.4
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 2.8e-95 352.8 300 60.0
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 3.7e-95 352.4 310 56.8
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 4.9e-95 352.1 300 59.7
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 8.3e-95 351.3 300 58.3
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 1.1e-94 350.9 300 59.7
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.4e-94 350.5 299 59.9
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 2.4e-94 349.7 300 56.7
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 4.1e-94 349.0 305 57.7
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 5.4e-94 348.6 300 58.3
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.2e-93 347.4 300 60.3
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 5.9e-93 345.1 300 57.0
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 7.8e-93 344.7 299 59.2
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.0e-92 344.4 299 58.2
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.7e-92 343.6 298 58.7
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 3.8e-92 342.4 301 59.1
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 8.6e-92 341.3 310 57.4
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 1.4e-89 334.0 310 55.5
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.2e-88 330.9 298 56.7
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.2e-88 330.9 300 55.0
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.0e-88 330.1 298 57.0
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.6e-88 329.7 303 56.8
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 7.5e-88 328.2 315 54.3
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 3.7e-87 325.9 310 53.9
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 6.4e-87 325.1 286 54.5
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 1.7e-84 317.0 307 56.7
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 1.9e-83 313.5 298 54.4
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 1.9e-83 313.5 298 52.0
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 3.3e-83 312.8 298 54.4
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 4.3e-83 312.4 306 55.9
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 5.6e-83 312.0 310 52.6
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 9.5e-83 311.2 298 54.0
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 6.2e-82 308.5 298 53.4
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 8.0e-82 308.1 298 53.7
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.1e-81 307.8 298 53.4
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 1.8e-81 307.0 298 53.7
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 1.8e-81 307.0 298 53.7
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.0e-80 303.5 300 53.0
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 7.5e-80 301.6 306 52.3
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 2.9e-79 299.7 299 52.8
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 6.4e-79 298.5 299 52.8
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 6.4e-79 298.5 299 52.8
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 8.3e-79 298.1 300 52.7
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 8.3e-79 298.1 299 52.8
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 8.3e-79 298.1 310 51.9
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 1.1e-78 297.7 299 52.5
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.9e-75 287.0 269 54.6
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 8.3e-71 271.6 310 47.7
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 4.7e-66 255.8 189 66.7
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 6.2e-66 255.4 300 45.0
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 5.1e-60 235.7 209 55.5
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 5.6e-59 232.3 220 53.2
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 7.6e-48 195.3 152 64.5
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 6.4e-47 192.2 161 55.9
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.1e-46 191.4 163 55.2
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 3.3e-43 179.9 112 81.2
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 3.0e-36 156.8 144 56.9
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 6.2e-34 149.1 134 55.2
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.5e-29 133.3 166 48.8
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.5e-24 117.9 88 62.5
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 5.0e-23 112.8 170 39.4
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 4.3e-19 99.8 74 74.3
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 5.3e-17 92.8 113 47.8
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 6.5e-15 85.9 137 36.5
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.7e-10 71.2 135 31.1
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 2.8e-10 70.5 138 29.7
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 5.3e-09 66.2 193 28.0
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 5.3e-09 66.2 219 26.0
PSO541G2034 Papaver somniferum HOM05D000424 ORTHO05D000355 1.5e-08 64.7 201 25.4
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.0e-08 64.3 190 24.2
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 2.0e-08 64.3 190 24.2
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 2.0e-08 64.3 190 24.2
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 2.0e-08 64.3 162 26.5
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 3.8e-07 60.1 135 28.1
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 5.0e-07 59.7 183 25.7
FAN13G2474 Fragaria x ananassa HOM05D002007 ORTHO05D000355 5.0e-07 59.7 61 42.6
FAN08G1989 Fragaria x ananassa HOM05D006218 ORTHO05D007338 8.5e-07 58.9 186 23.7
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 1.1e-06 58.5 129 27.9
Cfa017088 Carpinus fangiana HOM05D007559 ORTHO05D009642 1.1e-06 58.5 207 26.6
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 1.1e-06 58.5 129 27.9
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.4e-06 58.2 161 22.4
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.4e-06 58.2 170 27.6
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 1.9e-06 57.8 135 28.1
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 2.5e-06 57.4 135 27.4
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 2.5e-06 57.4 180 24.4
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 2.5e-06 57.4 129 27.1
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 2.5e-06 57.4 129 27.1
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 3.2e-06 57.0 183 24.0
Os07g0603900 Oryza sativa ssp. japonica HOM05D005362 ORTHO05D006895 3.2e-06 57.0 128 26.6
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 3.2e-06 57.0 211 23.7
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 4.2e-06 56.6 217 26.3
Ca_08075_v3 Cicer arietinum L. HOM05D008684 ORTHO05D010796 4.2e-06 56.6 156 25.6
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 4.2e-06 56.6 129 27.1
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 5.5e-06 56.2 176 23.9
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 5.5e-06 56.2 159 28.9
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 7.2e-06 55.8 154 23.4
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 7.2e-06 55.8 170 28.2
COL.COLO4_19322 Corchorus olitorius HOM05D006218 ORTHO05D007338 9.4e-06 55.5 108 30.6
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 9.4e-06 55.5 103 31.1
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 9.4e-06 55.5 135 26.7
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 9.4e-06 55.5 160 28.8


User provided reference genes

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