Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 7.1e-298 1026.5 539 100.0
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.4e-293 1012.3 539 97.8
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 8.2e-270 933.3 551 89.3
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.3e-267 926.0 548 89.6
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.2e-267 925.2 551 88.6
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 5.0e-267 924.1 551 88.4
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.0e-263 912.1 543 87.8
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 9.2e-221 770.4 556 74.1
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.3e-211 739.2 563 70.7
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 8.6e-211 737.3 623 65.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 7.6e-207 724.2 592 67.7
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 5.4e-205 718.0 554 70.2
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.4e-200 702.6 541 68.9
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 5.8e-199 698.0 578 67.1
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 9.9e-199 697.2 521 68.7
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.9e-198 695.7 538 68.8
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 8.4e-198 694.1 525 70.3
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.7e-196 689.1 500 72.2
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 3.5e-196 688.7 534 68.0
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 6.0e-196 688.0 573 66.1
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.3e-195 686.0 544 67.1
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 2.3e-195 686.0 525 69.7
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 6.6e-195 684.5 541 68.6
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 8.7e-195 684.1 541 67.7
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.1e-194 683.7 539 67.0
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 2.5e-194 682.6 536 67.2
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.5e-194 682.6 548 65.7
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 5.6e-194 681.4 529 68.2
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 7.3e-194 681.0 572 64.3
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.3e-193 680.2 533 68.3
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.1e-192 677.2 531 69.5
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.8e-192 676.4 557 65.9
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.4e-192 676.0 538 68.2
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.4e-192 676.0 538 68.2
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 9.0e-192 674.1 553 64.2
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 9.0e-192 674.1 518 68.0
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.2e-191 673.7 547 65.6
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 3.4e-191 672.2 545 66.1
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 4.5e-191 671.8 519 68.0
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 7.6e-191 671.0 545 67.2
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.3e-190 670.2 535 68.6
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.3e-190 670.2 534 67.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.7e-190 669.8 546 64.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 3.8e-190 668.7 545 66.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 6.4e-190 667.9 553 63.7
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 8.4e-190 667.5 524 68.7
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.4e-189 666.8 527 67.6
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.4e-189 666.8 544 66.5
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.9e-189 666.4 572 64.5
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 4.2e-189 665.2 538 66.9
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.4e-189 664.8 535 67.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.4e-189 664.8 535 68.0
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 5.4e-189 664.8 507 68.6
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 9.3e-189 664.1 536 67.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.2e-188 663.7 533 66.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.2e-188 663.7 503 69.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.6e-188 663.3 534 64.2
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.6e-188 661.8 548 65.0
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.0e-188 661.4 529 66.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 6.0e-188 661.4 533 64.9
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 7.9e-188 661.0 534 66.9
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 7.9e-188 661.0 534 67.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.3e-187 660.2 534 66.9
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.3e-187 660.2 556 64.0
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.8e-187 659.8 558 63.4
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.0e-187 659.1 552 62.5
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 5.1e-187 658.3 545 64.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 8.7e-187 657.5 552 62.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.1e-186 657.1 528 66.3
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.5e-186 656.8 534 64.6
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 2.5e-186 656.0 562 64.8
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 5.6e-186 654.8 539 63.3
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 5.6e-186 654.8 547 63.6
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 7.4e-186 654.4 535 64.5
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.3e-185 653.7 529 66.2
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.1e-185 652.9 540 65.7
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.7e-185 652.1 516 67.4
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.4e-184 649.4 529 65.8
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 6.9e-184 647.9 544 64.5
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.7e-182 643.3 510 67.3
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.2e-182 642.9 550 63.5
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 4.2e-181 638.6 537 61.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 5.5e-181 638.3 520 63.8
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 5.5e-181 638.3 530 63.6
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.1e-178 630.6 498 66.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 6.2e-177 624.8 542 61.8
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 2.4e-176 622.9 557 61.6
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 6.9e-176 621.3 549 61.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.7e-174 616.7 487 65.9
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.2e-174 616.3 559 61.2
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 1.6e-172 610.1 459 68.6
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 3.3e-170 602.4 502 64.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.7e-166 590.1 552 60.1
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 4.7e-156 555.4 579 54.7
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 8.2e-153 544.7 503 61.4
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 1.4e-152 543.9 444 63.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.6e-146 523.1 463 61.6
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.4e-141 504.6 593 48.6
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.7e-140 502.3 500 56.8
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 4.7e-140 502.3 438 59.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.0e-135 486.9 507 54.6
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 4.7e-124 449.1 390 62.3
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.2e-111 407.9 348 63.2
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.9e-110 402.9 308 67.9
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.6e-108 397.5 296 71.3
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.8e-107 394.0 514 44.2
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.6e-106 390.2 274 73.4
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.3e-105 387.9 316 63.3
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 6.4e-105 385.6 330 63.6
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.4e-104 384.4 378 55.6
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 2.1e-103 380.6 306 65.7
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.5e-101 373.6 306 64.7
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.7e-100 369.4 395 53.7
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.4e-99 367.9 340 57.9
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 5.2e-99 365.9 340 57.6
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.8e-99 365.5 555 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.1e-95 354.0 527 41.2
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.5e-90 337.8 556 36.7
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 4.9e-81 306.2 304 57.9
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.3e-78 297.4 255 62.4
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 4.5e-66 256.5 177 74.6
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.4e-51 207.6 507 32.1
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.9e-48 198.0 185 57.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 3.6e-47 193.7 261 48.3
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 6.9e-43 179.5 169 59.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 7.2e-40 169.5 425 28.5
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 3.5e-34 150.6 116 68.1
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 4.5e-34 150.2 358 29.3
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.2e-30 136.7 387 28.7
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.7e-29 133.3 105 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 7.0e-27 126.3 434 27.2
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 7.2e-24 116.3 71 74.6
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.1e-23 114.8 88 65.9
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.7e-23 114.4 351 26.5
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.5e-21 108.6 149 44.3
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.7e-20 104.0 119 51.3
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 5.4e-19 100.1 520 24.0
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 7.0e-19 99.8 463 24.4
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.9e-16 91.7 119 45.4
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 1.3e-12 79.0 235 31.1
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-09 68.9 406 22.7
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 2.8e-07 61.2 218 26.1
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 3.6e-07 60.8 218 25.7
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 4.7e-07 60.5 50 54.0
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 1.0e-06 59.3 218 24.8
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 6.8e-06 56.6 235 23.8
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 6.8e-06 56.6 218 23.9


User provided reference genes

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