Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.2e-260 901.7 451 100.0
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 3.2e-150 535.8 558 54.7
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 6.2e-146 521.5 558 53.6
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.1e-146 521.2 555 54.1
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.8e-145 520.0 558 53.8
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.1e-145 519.2 558 53.4
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 3.4e-144 515.8 555 53.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.9e-139 500.0 555 52.4
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 2.5e-139 499.6 539 52.3
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 5.3e-137 491.9 557 52.2
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 3.4e-136 489.2 554 50.5
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.7e-135 486.9 553 49.9
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 6.5e-135 485.0 555 50.6
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.2e-134 482.6 522 53.8
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.6e-133 480.3 535 52.3
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 6.0e-133 478.4 555 50.3
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 3.0e-132 476.1 555 49.2
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.3e-131 472.6 491 56.0
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 9.7e-131 471.1 555 49.5
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.6e-130 470.3 550 49.8
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.7e-130 469.2 553 47.9
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 3.1e-129 466.1 539 49.0
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.9e-129 464.9 553 47.4
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 9.0e-129 464.5 542 50.2
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.6e-128 463.0 552 48.7
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 4.5e-128 462.2 549 50.5
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 4.5e-128 462.2 556 49.6
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 7.7e-128 461.5 496 51.6
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.0e-127 461.1 500 53.6
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.7e-127 460.3 570 48.9
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 2.2e-127 459.9 545 49.2
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.9e-127 459.5 524 49.8
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 6.5e-127 458.4 536 49.8
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 8.5e-127 458.0 532 53.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 8.5e-127 458.0 541 48.8
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.1e-126 457.6 605 46.8
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.4e-126 457.2 544 48.0
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.9e-126 456.8 517 51.5
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.9e-126 456.8 517 51.5
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 4.2e-126 455.7 542 48.9
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.2e-126 455.7 545 48.8
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 4.2e-126 455.7 534 49.6
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 9.4e-126 454.5 542 47.8
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.6e-125 453.8 544 49.3
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-125 453.8 559 48.1
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.1e-125 453.4 543 49.2
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.1e-125 453.4 555 47.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.6e-125 452.6 542 47.8
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 7.9e-125 451.4 553 49.2
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.0e-124 451.1 543 48.3
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.3e-124 449.9 542 47.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 3.0e-124 449.5 526 51.1
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 5.1e-124 448.7 553 48.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 2.5e-123 446.4 535 48.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 3.3e-123 446.0 537 48.0
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.3e-123 445.7 542 47.8
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 9.7e-123 444.5 516 50.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.7e-122 443.7 540 49.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.7e-122 443.7 493 51.7
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.7e-122 442.6 535 48.2
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.8e-122 442.2 530 48.1
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 4.8e-122 442.2 532 47.9
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.3e-122 441.8 559 46.9
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.4e-121 440.7 522 49.2
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 4.1e-121 439.1 489 51.3
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 5.3e-121 438.7 559 46.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 9.1e-121 438.0 477 52.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.0e-120 436.8 559 46.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 2.0e-120 436.8 576 45.1
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 2.0e-120 436.8 505 49.9
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 2.6e-120 436.4 531 49.9
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 7.7e-120 434.9 559 46.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 7.7e-120 434.9 559 46.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 3.8e-119 432.6 533 48.0
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.9e-118 430.3 533 49.2
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.5e-118 429.9 531 48.8
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 7.2e-118 428.3 487 51.1
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.6e-117 427.2 587 45.7
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.6e-117 427.2 556 46.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.6e-117 427.2 548 45.6
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.6e-117 426.0 534 48.5
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.7e-117 425.6 530 48.7
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 6.1e-117 425.2 528 49.2
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 6.1e-117 425.2 509 48.9
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.0e-116 424.5 499 49.5
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.4e-116 424.1 290 77.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.2e-114 416.8 508 50.0
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.1e-113 414.5 536 47.6
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.4e-113 414.1 500 49.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.4e-113 413.3 500 48.6
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 4.1e-113 412.5 489 49.7
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 5.3e-113 412.1 500 48.0
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 6.1e-109 398.7 478 48.1
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.0e-107 393.7 489 47.4
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.3e-103 380.9 501 46.3
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.2e-99 367.9 284 67.3
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.4e-99 365.9 368 54.6
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.3e-98 364.4 283 66.1
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 8.3e-98 361.7 534 44.9
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.4e-97 360.1 279 67.7
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.8e-92 344.0 573 42.1
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.8e-92 341.7 299 64.9
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 4.4e-91 339.3 270 63.3
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 8.9e-84 315.1 313 55.3
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 7.3e-78 295.4 422 43.4
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.9e-74 282.7 422 41.7
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 7.0e-73 278.9 395 43.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.6e-72 277.7 192 73.4
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.5e-56 223.4 555 30.8
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 4.6e-56 223.0 512 33.2
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 6.0e-56 222.6 541 32.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.6e-53 213.4 515 30.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.8e-52 209.1 232 47.4
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.6e-51 207.2 563 30.6
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 6.0e-48 196.1 318 39.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.5e-46 190.7 247 44.5
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 4.0e-44 183.3 174 58.0
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-43 181.4 123 71.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.1e-36 158.7 133 63.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 6.4e-34 149.4 235 38.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.0e-23 115.5 87 67.8
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 4.8e-21 106.7 238 31.9
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.1e-20 105.5 200 34.0
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.2e-19 102.1 67 77.6
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 6.5e-18 96.3 66 68.2
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 6.5e-18 96.3 92 52.2
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.5e-16 90.5 53 75.5
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 6.9e-12 76.3 65 58.5
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.1e-08 64.7 142 31.0


User provided reference genes

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