Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-96 355.5 179 100.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.1e-73 279.3 229 64.2
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.1e-73 279.3 226 65.9
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.8e-73 278.9 243 65.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 6.9e-72 274.2 231 62.8
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.9e-70 268.1 188 71.3
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.4e-69 264.6 213 64.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.1e-64 250.4 228 58.3
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 9.0e-64 247.3 225 58.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 5.8e-63 244.6 226 56.2
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 6.0e-60 234.6 229 53.3
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.0e-60 234.6 225 54.7
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 5.1e-59 231.5 225 53.8
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.7e-59 231.1 194 63.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.1e-58 230.3 230 52.2
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.1e-58 230.3 223 54.7
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.3e-58 228.4 225 54.2
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.7e-58 228.0 231 51.5
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 5.7e-58 228.0 226 52.7
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 7.4e-58 227.6 224 53.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 7.4e-58 227.6 224 51.8
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.3e-57 226.9 224 51.8
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 8.2e-57 224.2 218 53.7
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-56 223.8 224 52.2
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-56 223.0 219 52.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 3.1e-56 222.2 221 52.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.9e-56 221.1 217 52.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.2e-55 220.3 226 50.0
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.6e-55 219.2 217 51.6
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.6e-55 219.2 217 51.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.5e-55 218.4 223 50.7
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 4.5e-55 218.4 220 50.9
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.0e-54 217.2 225 52.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.3e-54 216.9 217 51.2
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.3e-54 216.9 225 52.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.3e-54 216.9 232 49.6
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.0e-54 214.9 227 50.7
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 6.5e-54 214.5 226 50.0
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 8.4e-54 214.2 230 50.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.4e-54 214.2 226 49.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 8.4e-54 214.2 226 49.1
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.1e-53 213.8 226 49.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.1e-53 213.8 216 51.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.4e-53 213.4 221 49.3
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.9e-53 213.0 220 52.3
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 3.2e-53 212.2 224 51.8
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 4.2e-53 211.8 226 48.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 5.5e-53 211.5 217 50.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.2e-52 210.3 225 50.2
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 2.1e-52 209.5 223 50.2
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.7e-52 209.1 219 51.6
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.5e-52 208.8 221 51.1
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.5e-52 208.8 175 56.6
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 6.1e-52 208.0 225 51.1
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 6.1e-52 208.0 220 50.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 7.9e-52 207.6 227 48.5
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.3e-51 206.8 226 50.0
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.3e-51 206.1 221 49.3
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.7e-51 204.1 222 50.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.5e-50 202.6 224 47.3
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 5.7e-50 201.4 222 49.5
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 5.7e-50 201.4 221 48.9
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 9.7e-50 200.7 224 47.3
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 9.7e-50 200.7 220 48.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.3e-49 200.3 221 48.0
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.2e-49 199.5 221 49.8
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.8e-49 198.4 226 47.8
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 4.1e-48 195.3 200 51.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.3e-48 194.9 226 47.8
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.3e-48 194.9 258 45.3
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 9.0e-48 194.1 225 44.4
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.2e-47 193.7 220 46.4
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.5e-47 193.4 221 46.2
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.0e-47 193.0 221 47.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.6e-47 192.6 226 46.9
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.4e-47 192.2 219 46.1
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 8.5e-46 187.6 223 43.9
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 7.2e-45 184.5 221 43.4
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 7.2e-45 184.5 221 43.4
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 9.4e-45 184.1 206 47.1
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 9.4e-45 184.1 218 44.0
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-44 183.7 221 43.4
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.2e-44 183.7 221 43.4
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.6e-44 183.3 221 43.4
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.1e-44 183.0 217 43.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.6e-44 182.2 226 42.0
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.6e-44 181.8 217 43.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.6e-44 181.8 218 43.1
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 7.9e-44 181.0 228 43.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.0e-43 180.6 217 43.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.4e-43 180.3 218 43.1
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.8e-43 179.9 249 40.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.7e-43 177.9 217 45.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 8.8e-43 177.6 217 45.2
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.0e-42 176.4 217 44.7
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.0e-42 176.4 219 45.7
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.3e-42 175.6 217 42.4
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.3e-42 175.6 218 41.3
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.3e-42 175.3 219 41.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 9.7e-42 174.1 227 47.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.3e-41 173.7 220 41.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 1.3e-41 173.7 215 44.2
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.3e-41 173.7 187 48.7
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.2e-41 172.9 120 65.0
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 2.8e-41 172.6 219 42.0
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 3.7e-41 172.2 217 46.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 6.3e-41 171.4 219 42.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 6.3e-41 171.4 219 42.0
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.2e-41 171.0 219 41.6
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.2e-41 171.0 230 44.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.2e-41 171.0 230 44.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-40 170.6 219 42.0
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-40 170.6 219 42.0
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-40 170.6 219 42.0
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.4e-40 170.2 119 65.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 6.9e-40 167.9 199 43.7
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 9.1e-40 167.5 119 66.4
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.2e-39 167.2 119 66.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.0e-39 166.4 209 44.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.6e-39 166.0 196 46.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 7.7e-39 164.5 119 64.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.7e-38 163.3 118 64.4
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.2e-38 162.9 224 39.7
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.2e-38 162.9 224 39.7
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.9e-38 162.5 119 63.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 5.0e-38 161.8 119 63.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.1e-37 160.6 217 40.1
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.1e-37 160.6 120 63.3
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.9e-37 159.8 119 63.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 2.5e-37 159.5 221 43.0
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.5e-37 159.5 155 56.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-36 157.1 119 62.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.1e-36 156.4 121 59.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.1e-36 156.4 209 40.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.5e-34 150.2 204 40.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 9.7e-34 147.5 211 38.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.7e-33 145.6 192 41.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.1e-32 142.5 188 39.9
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 5.9e-31 138.3 156 49.4
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.2e-28 130.6 108 60.2
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.2e-28 130.6 108 60.2
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.6e-28 130.2 115 53.0
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 3.9e-27 125.6 217 35.0
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 5.7e-26 121.7 215 34.0
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 9.7e-26 120.9 193 35.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 8.2e-25 117.9 165 43.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 5.9e-23 111.7 75 68.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.3e-19 99.8 101 44.6
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.6e-18 96.3 76 59.2
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.6e-18 96.3 146 34.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.4e-18 95.5 49 87.8
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.3e-17 91.3 80 53.8
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.8e-16 90.1 105 43.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.2e-13 79.3 110 43.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 4.2e-13 79.0 50 74.0
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.4e-11 73.9 48 70.8
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.8e-11 71.6 123 35.8
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.5e-10 70.5 49 65.3
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 3.7e-09 65.9 50 60.0
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.4e-08 63.2 204 25.5


User provided reference genes

Program Settings