Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.7e-69 265.8 126 100.0
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.1e-67 257.3 126 96.8
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.8e-34 149.4 79 89.9
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.4e-32 141.0 78 82.1
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.1e-28 130.2 77 77.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 4.3e-28 128.3 77 77.9
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.3e-28 128.3 77 77.9
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 9.6e-28 127.1 78 73.1
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 5.2e-26 121.3 79 68.4
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 3.2e-23 112.1 79 60.8
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.6e-22 109.8 79 59.5
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 6.0e-22 107.8 79 60.8
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 7.8e-22 107.5 79 59.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 3.9e-21 105.1 79 58.2
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.9e-20 102.8 71 60.6
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.8e-19 98.2 79 58.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 6.2e-19 97.8 80 58.8
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.2e-19 97.8 79 51.9
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 6.2e-19 97.8 79 54.4
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 4.0e-18 95.1 78 55.1
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.0e-18 94.0 79 54.4
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.0e-17 92.8 79 53.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.6e-17 92.4 79 50.6
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.4e-17 92.0 89 48.3
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.4e-17 92.0 71 54.9
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 9.9e-17 90.5 68 61.8
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.7e-16 89.7 72 55.6
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 3.8e-16 88.6 80 56.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.9e-16 88.2 72 54.2
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.4e-15 86.7 81 45.7
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.9e-15 86.3 80 51.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.2e-15 85.5 83 49.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 3.2e-15 85.5 80 51.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 4.2e-15 85.1 83 49.4
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 4.2e-15 85.1 83 49.4
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 4.2e-15 85.1 80 51.2
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 5.4e-15 84.7 80 50.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 5.4e-15 84.7 80 50.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 7.1e-15 84.3 80 48.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 9.3e-15 84.0 101 45.5
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 9.3e-15 84.0 104 43.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.6e-14 83.2 80 55.0
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.1e-14 82.8 83 49.4
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 2.7e-14 82.4 84 51.2
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.7e-14 82.4 80 51.2
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.7e-14 82.4 86 47.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.7e-14 82.4 77 54.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.5e-14 82.0 80 53.8
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.5e-14 82.0 80 48.8
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 4.6e-14 81.6 68 51.5
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 4.6e-14 81.6 80 50.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.6e-14 81.6 83 49.4
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.6e-14 81.6 82 47.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 4.6e-14 81.6 78 47.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 6.0e-14 81.3 80 50.0
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 7.9e-14 80.9 80 46.2
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.0e-13 80.5 80 50.0
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.0e-13 80.5 80 50.0
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.3e-13 80.1 80 50.0
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.9e-13 78.6 80 45.0
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 3.9e-13 78.6 80 45.0
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 5.1e-13 78.2 95 42.1
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 5.1e-13 78.2 80 48.8
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 6.6e-13 77.8 80 43.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.6e-13 77.8 80 47.5
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 6.6e-13 77.8 80 45.0
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 6.6e-13 77.8 80 45.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 8.7e-13 77.4 80 50.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 8.7e-13 77.4 92 45.7
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.1e-12 77.0 84 51.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.1e-12 77.0 83 43.4
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-12 76.6 95 41.1
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.5e-12 76.6 79 44.3
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.5e-12 76.6 80 46.2
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.5e-12 76.6 80 48.8
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.9e-12 76.3 81 45.7
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.9e-12 76.3 80 43.8
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.5e-12 75.9 80 47.5
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 7.4e-12 74.3 79 43.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 7.4e-12 74.3 96 37.5
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.6e-11 73.2 80 43.8
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.8e-11 72.4 98 37.8
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.8e-11 72.4 98 37.8
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 3.6e-11 72.0 79 48.1
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.6e-11 72.0 80 41.2
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.6e-11 72.0 80 45.0
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.8e-11 71.6 80 41.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 4.8e-11 71.6 80 42.5
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 8.1e-11 70.9 80 41.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.8e-10 69.7 79 40.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.4e-10 69.3 80 40.0
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 4.0e-10 68.6 80 41.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 4.0e-10 68.6 80 41.2
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.9e-10 67.8 86 40.7
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 9.0e-10 67.4 80 40.0
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.0e-09 66.2 80 37.5
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 7.6e-09 64.3 74 41.9
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.9e-08 61.6 81 35.8
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 6.4e-08 61.2 58 44.8
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.4e-07 59.3 78 37.2
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 3.2e-07 58.9 93 33.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 7.9e-06 54.3 103 31.1


User provided reference genes

Program Settings