Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.1e-56 223.0 109 100.0
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.7e-34 148.7 84 85.7
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 5.9e-34 147.5 70 100.0
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 5.9e-34 147.5 70 100.0
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 5.9e-34 147.5 70 100.0
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 2.2e-33 145.6 70 98.6
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 8.5e-33 143.7 70 97.1
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 8.5e-33 143.7 70 95.7
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 8.5e-33 143.7 70 95.7
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 8.5e-33 143.7 70 94.3
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.1e-32 143.3 70 97.1
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.1e-32 143.3 70 97.1
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.1e-32 143.3 70 97.1
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.5e-32 142.9 70 94.3
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.9e-32 142.5 70 94.3
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.2e-32 141.7 70 94.3
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.2e-32 141.7 70 94.3
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.2e-32 141.7 70 92.9
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 4.2e-32 141.4 70 92.9
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 5.5e-32 141.0 70 92.9
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 5.5e-32 141.0 70 94.3
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 5.5e-32 141.0 70 94.3
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 5.5e-32 141.0 70 94.3
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 5.5e-32 141.0 70 94.3
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.2e-31 139.8 70 94.3
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 1.2e-31 139.8 70 92.9
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.2e-31 139.8 70 92.9
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.6e-31 139.4 70 92.9
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 3.6e-31 138.3 70 91.4
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 3.6e-31 138.3 70 91.4
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 4.7e-31 137.9 70 92.9
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 8.0e-31 137.1 70 90.0
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 8.0e-31 137.1 70 91.4
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.0e-30 136.7 70 91.4
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.0e-30 136.7 70 92.9
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.8e-30 136.0 78 82.1
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 1.8e-30 136.0 70 90.0
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.3e-30 135.6 70 91.4
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 3.0e-30 135.2 70 91.4
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 3.0e-30 135.2 70 91.4
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 4.0e-30 134.8 70 90.0
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 5.2e-30 134.4 70 88.6
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 88.6
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 90.0
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 88.6
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 88.6
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 88.6
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 88.6
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 1.2e-29 133.3 70 87.1
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 88.6
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 88.6
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 88.6
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 87.1
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 85.7
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 88.6
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.5e-29 132.9 70 88.6
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.0e-29 132.5 70 91.4
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 85.7
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 3.4e-29 131.7 70 87.1
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 4.4e-29 131.3 70 87.1
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 4.4e-29 131.3 70 87.1
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 4.4e-29 131.3 70 87.1
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 4.4e-29 131.3 68 89.7
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 4.4e-29 131.3 70 90.0
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 7.5e-29 130.6 70 87.1
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 7.5e-29 130.6 70 85.7
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 7.5e-29 130.6 70 87.1
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 7.5e-29 130.6 76 80.3
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.3e-28 129.8 70 85.7
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 2.2e-28 129.0 70 85.7
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 2.2e-28 129.0 70 85.7
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 2.2e-28 129.0 70 84.3
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 2.2e-28 129.0 70 85.7
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 2.8e-28 128.6 70 84.3
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 4.8e-28 127.9 70 85.7
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 4.8e-28 127.9 70 82.9
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 6.3e-28 127.5 70 81.4
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 1.1e-27 126.7 70 84.3
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 4.1e-27 124.8 70 81.4
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.1e-27 124.8 70 81.4
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 7.0e-27 124.0 70 82.9
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.6e-26 122.9 70 81.4
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 4.5e-26 121.3 70 80.0
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 4.5e-26 121.3 89 69.7
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.0e-25 120.2 62 87.1
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.3e-25 119.0 62 87.1
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 2.9e-25 118.6 99 62.6
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 2.9e-25 118.6 69 84.1
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 9.5e-24 113.6 70 71.4
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 9.5e-24 113.6 68 76.5
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 3.6e-23 111.7 70 72.9
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 6.1e-23 110.9 68 76.5
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 3.0e-22 108.6 148 45.9
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.3e-20 103.2 70 65.7
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 3.7e-20 101.7 49 95.9
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.1e-19 100.1 52 86.5
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.1e-19 98.6 47 93.6
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 2.0e-18 95.9 62 75.8
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 2.0e-18 95.9 55 80.0
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 4.5e-18 94.7 61 73.8
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 4.5e-18 94.7 48 91.7
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 2.5e-16 89.0 51 78.4
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 3.3e-16 88.6 44 86.4
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 6.1e-15 84.3 62 66.1
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 1.4e-14 83.2 91 47.3
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 4.0e-14 81.6 47 78.7
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 2.0e-13 79.3 48 77.1
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 3.4e-13 78.6 70 52.9
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 3.4e-13 78.6 37 94.6
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.8e-13 77.8 61 62.3
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 5.8e-13 77.8 38 86.8
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 7.5e-13 77.4 69 59.4
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 1.3e-12 76.6 64 50.0
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 1.7e-12 76.3 37 89.2
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 4.9e-12 74.7 36 94.4
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-12 74.3 52 67.3
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 6.4e-12 74.3 42 81.0
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 8.3e-12 73.9 34 100.0
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.4e-11 73.2 47 72.3
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 3.2e-11 72.0 46 71.7
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.2e-10 70.1 42 76.2
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.9e-09 65.1 36 83.3
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.9e-09 65.1 36 83.3
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.9e-09 65.1 36 83.3
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 3.9e-09 65.1 36 83.3
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.3e-06 55.8 27 92.6


User provided reference genes

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