Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.8e-88 328.2 169 100.0
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.8e-83 311.2 163 98.2
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.2e-81 306.6 169 91.1
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 9.4e-79 297.0 169 89.9
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.1e-78 295.8 169 87.0
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.6e-78 295.0 169 87.6
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 5.7e-68 261.2 169 76.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.8e-67 258.8 169 74.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 6.3e-67 257.7 167 76.0
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.1e-66 256.9 169 74.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.4e-66 255.8 166 77.7
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.3e-66 254.6 164 76.2
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 5.9e-65 251.1 164 75.6
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.0e-64 250.4 166 74.7
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.7e-64 249.6 162 75.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 3.8e-64 248.4 166 72.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 5.0e-64 248.1 166 73.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.4e-63 246.5 164 75.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.4e-63 246.5 169 73.4
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.5e-63 245.7 163 73.0
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 4.2e-63 245.0 166 72.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 9.4e-63 243.8 165 75.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-62 243.4 169 72.2
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.6e-62 241.9 165 73.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 3.6e-62 241.9 165 73.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.7e-62 241.5 165 72.7
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 6.1e-62 241.1 165 72.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.1e-62 241.1 152 78.3
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 8.0e-62 240.7 166 70.5
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 8.0e-62 240.7 165 72.7
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 8.0e-62 240.7 168 72.0
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 71.1
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.4e-61 240.0 168 71.4
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.3e-61 239.2 166 71.1
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 71.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 71.1
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.0e-61 238.8 160 72.5
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.9e-61 238.4 166 71.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.2e-61 238.0 168 71.4
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.8e-61 237.3 168 70.8
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.1e-60 236.9 192 65.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 72.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 72.3
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 72.3
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 72.3
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.3e-60 235.3 166 69.9
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.4e-60 235.0 166 72.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 4.4e-60 235.0 163 73.6
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 5.7e-60 234.6 168 68.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 5.7e-60 234.6 166 69.9
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 5.7e-60 234.6 163 72.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 7.4e-60 234.2 166 69.9
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 7.4e-60 234.2 166 68.7
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 4.8e-59 231.5 166 69.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 69.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 69.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 69.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 69.9
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.4e-58 229.2 159 73.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.4e-58 229.2 166 69.3
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.4e-58 229.2 162 69.1
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.1e-58 228.8 166 68.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.1e-58 228.4 166 66.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 7.0e-58 227.6 166 68.1
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 9.1e-58 227.3 166 68.7
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.2e-57 226.9 166 65.7
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 4.5e-57 224.9 166 68.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-56 222.6 154 74.0
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.8e-56 221.9 166 68.1
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 3.2e-55 218.8 166 65.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 4.2e-55 218.4 162 66.7
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.6e-54 215.3 167 65.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 8.0e-54 214.2 188 59.0
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-53 213.4 166 63.3
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.3e-53 212.6 164 64.0
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.3e-53 212.6 162 65.4
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.0e-53 212.2 203 57.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 4.0e-53 211.8 148 71.6
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.2e-53 211.5 167 59.3
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 8.8e-53 210.7 190 58.9
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 4.4e-52 208.4 138 73.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.7e-49 199.1 165 60.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.5e-49 198.4 161 60.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.9e-48 195.7 139 68.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 6.5e-48 194.5 163 58.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 6.5e-48 194.5 163 58.9
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-47 193.7 190 53.7
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.9e-47 193.0 168 55.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.5e-47 192.6 168 55.4
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.2e-47 192.2 168 54.8
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.2e-47 192.2 168 54.8
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 5.5e-47 191.4 162 55.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.2e-47 191.0 163 58.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 7.2e-47 191.0 161 60.2
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 9.4e-47 190.7 174 59.8
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.2e-46 190.3 137 63.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.6e-46 189.9 124 76.6
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.7e-46 188.3 167 56.3
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.7e-46 188.3 169 55.6
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 6.1e-46 188.0 118 76.3
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 8.0e-46 187.6 122 77.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.0e-45 187.2 136 65.4
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.0e-45 187.2 139 65.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-45 186.8 153 56.2
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-45 186.8 165 55.2
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.3e-45 186.0 169 54.4
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 5.2e-45 184.9 137 63.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.8e-45 184.1 169 54.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.4e-44 181.8 169 55.0
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 7.5e-44 181.0 126 66.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.2e-43 179.5 140 57.9
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.7e-43 178.7 128 65.6
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 3.7e-43 178.7 116 75.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.4e-42 176.8 125 69.6
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 5.4e-42 174.9 165 50.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-40 169.9 116 73.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 6.6e-40 167.9 135 64.4
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.1e-38 162.9 116 72.4
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 8.0e-38 161.0 122 64.8
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 7.0e-34 147.9 116 61.2
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.7e-33 146.0 160 50.6
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.9e-33 144.8 163 46.6
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.0e-32 141.7 156 50.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 9.5e-31 137.5 118 57.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-30 137.1 88 75.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.8e-30 136.0 129 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 3.6e-30 135.6 163 43.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.4e-28 128.6 125 56.0
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 7.5e-28 127.9 122 53.3
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-26 124.0 112 58.9
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.7e-25 119.4 143 42.0
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.5e-25 119.0 163 47.2
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 6.0e-25 118.2 118 48.3
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 3.9e-24 115.5 75 72.0
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.1e-21 107.5 71 73.2
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.1e-21 105.9 144 42.4
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.0e-20 103.2 91 53.8
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 7.5e-20 101.3 84 59.5
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-19 99.0 75 58.7
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.7e-19 99.0 75 58.7
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.7e-19 99.0 75 58.7
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 7.0e-18 94.7 71 60.6
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.3e-16 89.7 99 49.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.5e-15 86.3 52 73.1
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 3.3e-15 85.9 163 38.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 3.1e-13 79.3 59 62.7
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.5e-12 77.0 69 58.0
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.7e-11 73.6 75 53.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.1e-10 70.9 48 81.2
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.4e-10 69.7 58 56.9
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-10 68.9 54 63.0
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-10 68.9 49 69.4
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-10 68.9 49 69.4
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-09 67.0 54 63.0
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.1e-06 56.6 40 67.5


User provided reference genes

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