Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001820g0170 Nicotiana tabacum HOM05D002808 ORTHO05D003135 8.0e-103 377.1 190 100.0
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 2.4e-67 259.2 151 84.8
Peaxi162Scf00748g00011 Petunia axillaris HOM05D002808 ORTHO05D003135 2.5e-64 249.2 166 77.7
Nitab4.5_0009790g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 8.4e-60 234.2 161 77.6
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 1.1e-59 233.8 141 84.4
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 1.1e-59 233.8 141 84.4
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 7.3e-48 194.5 133 72.2
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 2.6e-45 186.0 132 71.2
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 6.4e-44 181.4 150 64.0
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 2.5e-40 169.5 152 58.6
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 9.6e-40 167.5 183 49.2
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 9.6e-40 167.5 152 57.9
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 1.3e-39 167.2 152 57.2
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 3.7e-39 165.6 117 66.7
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 3.7e-39 165.6 117 66.7
Sopen03g002530 Solanum pennellii HOM05D002808 ORTHO05D003135 6.9e-38 161.4 117 65.8
CAN.G289.35 Capsicum annuum HOM05D002808 ORTHO05D003135 1.7e-36 156.8 184 46.2
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 4.3e-32 142.1 136 53.7
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 3.7e-31 139.0 112 60.7
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 3.7e-31 139.0 112 60.7
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 2.9e-28 129.4 138 47.8
Actinidia01909 Actinidia chinensis HOM05D002808 ORTHO05D003135 6.1e-26 121.7 133 47.4
vmacro03837 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 5.1e-25 118.6 138 46.4
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 1.1e-24 117.5 96 57.3
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 1.5e-24 117.1 160 42.5
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 1.9e-24 116.7 150 43.3
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.5e-24 116.3 143 44.8
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 2.5e-24 116.3 143 44.8
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 3.3e-24 115.9 122 47.5
SGA_v2.0_scaffold22G09764 Striga asiatica HOM05D002808 ORTHO05D003135 4.3e-24 115.5 132 50.0
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 1.1e-22 110.9 120 49.2
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 4.1e-22 109.0 123 42.3
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 1.2e-21 107.5 123 41.5
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 1.5e-21 107.1 146 41.1
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 2.9e-20 102.8 115 42.6
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 1.4e-19 100.5 143 39.9
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.4e-19 100.5 129 44.2
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 1.9e-19 100.1 108 42.6
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 4.2e-19 99.0 101 45.5
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 4.6e-18 95.5 101 44.6
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 1.4e-17 94.0 109 42.2
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-17 94.0 109 42.2
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 1.4e-17 94.0 109 42.2
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 1.4e-17 94.0 143 39.9
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 1.4e-17 94.0 104 44.2
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 1.8e-17 93.6 110 45.5
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 1.8e-17 93.6 117 41.0
Nitab4.5_0002066g0070 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.8e-17 93.6 62 71.0
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 3.0e-17 92.8 143 37.1
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 6.7e-17 91.7 107 43.0
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 6.7e-17 91.7 132 38.6
Cpa.g.sc530.4 Carica papaya HOM05D002808 ORTHO05D003135 8.8e-17 91.3 113 41.6
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 8.8e-17 91.3 87 49.4
Dinv12909 Davidia involucrata HOM05D000973 ORTHO05D000652 8.8e-17 91.3 122 35.2
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 8.8e-17 91.3 104 43.3
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 1.1e-16 90.9 92 46.7
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 1.1e-16 90.9 92 46.7
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 1.5e-16 90.5 109 40.4
BcaB07g31258 Brassica carinata HOM05D002808 ORTHO05D003135 2.0e-16 90.1 92 46.7
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 2.5e-16 89.7 109 41.3
Haze_13133 Corylus avellana HOM05D002808 ORTHO05D003135 2.5e-16 89.7 121 37.2
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 2.5e-16 89.7 101 44.6
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 3.3e-16 89.4 143 38.5
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 4.3e-16 89.0 109 40.4
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 5.7e-16 88.6 112 43.8
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 5.7e-16 88.6 116 39.7
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 7.4e-16 88.2 121 38.0
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 9.7e-16 87.8 121 38.8
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 9.7e-16 87.8 99 44.4
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 9.7e-16 87.8 121 38.8
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 1.3e-15 87.4 118 38.1
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.3e-15 87.4 98 42.9
Lalb_Chr05g0218311 Lupinus albus HOM05D002808 ORTHO05D003135 1.3e-15 87.4 109 41.3
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 1.7e-15 87.0 132 33.3
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.7e-15 87.0 109 39.4
HanXRQChr04g0124011 Helianthus annuus HOM05D002808 ORTHO05D003135 2.2e-15 86.7 123 42.3
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 3.7e-15 85.9 109 38.5
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 3.7e-15 85.9 148 38.5
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 3.7e-15 85.9 77 58.4
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 6.3e-15 85.1 91 42.9
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 6.3e-15 85.1 137 37.2
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 8.2e-15 84.7 109 37.6
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 8.2e-15 84.7 109 37.6
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 1.1e-14 84.3 135 40.0
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 1.4e-14 84.0 102 37.3
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 1.8e-14 83.6 135 37.0
Thhalv10009997m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 2.4e-14 83.2 108 38.9
Lsat_1_v5_gn_7_19381 Lactuca sativa HOM05D002808 ORTHO05D003135 2.4e-14 83.2 112 36.6
Lj8A114G40 Lonicera japonica HOM05D002808 ORTHO05D003135 2.4e-14 83.2 146 31.5
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 3.1e-14 82.8 121 31.4
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 4.1e-14 82.4 143 35.7
CARHR011260 Cardamine hirsuta HOM05D002808 ORTHO05D003135 6.9e-14 81.6 108 37.0
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 6.9e-14 81.6 119 38.7
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 9.1e-14 81.3 109 40.4
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 9.1e-14 81.3 104 41.3
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 9.1e-14 81.3 119 37.8
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 9.1e-14 81.3 113 38.1
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 2.0e-13 80.1 89 43.8
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 3.4e-13 79.3 140 32.1
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 4.5e-13 79.0 116 36.2
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 4.5e-13 79.0 92 40.2
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 5.9e-13 78.6 116 37.1
AL1G22050 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 7.7e-13 78.2 102 37.3
Aa31LG1G3840 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.0e-12 77.8 147 31.3
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.0e-12 77.8 116 37.1
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 1.0e-12 77.8 116 35.3
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.3e-12 77.4 91 38.5
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.7e-12 77.0 106 36.8
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 2.2e-12 76.6 106 37.7
Psat7g111840 Pisum sativum HOM05D002808 ORTHO05D003135 2.9e-12 76.3 107 36.4
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 3.8e-12 75.9 116 36.2
AT4G04980 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 5.0e-12 75.5 121 34.7
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 6.5e-12 75.1 116 37.1
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 6.5e-12 75.1 162 30.2
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 6.5e-12 75.1 162 30.2
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 6.5e-12 75.1 83 42.2
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 6.5e-12 75.1 143 34.3
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 6.5e-12 75.1 133 34.6
AT1G11070 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 1.1e-11 74.3 107 34.6
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.1e-11 74.3 114 36.0
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.1e-11 74.3 123 33.3
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 1.4e-11 73.9 156 30.8
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-11 73.9 156 30.8
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 1.9e-11 73.6 98 36.7
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.9e-11 73.6 109 36.7
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 1.9e-11 73.6 109 36.7
Sp1g09760 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.9e-11 73.6 105 38.1
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 2.5e-11 73.2 164 31.7
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 2.5e-11 73.2 98 36.7
C08p48350 Brassica napus HOM05D002808 ORTHO05D003135 2.5e-11 73.2 98 38.8
BolC8t52374H Brassica oleracea HOM05D002808 ORTHO05D003135 2.5e-11 73.2 98 38.8
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 2.5e-11 73.2 110 36.4
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 3.2e-11 72.8 108 34.3
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 4.2e-11 72.4 144 34.7
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 5.5e-11 72.0 93 40.9
BcaC07g41790 Brassica carinata HOM05D002808 ORTHO05D003135 5.5e-11 72.0 98 38.8
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 5.5e-11 72.0 162 29.6
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 7.2e-11 71.6 119 37.0
Nn2g12560 Nelumbo nucifera HOM05D002808 ORTHO05D003135 7.2e-11 71.6 92 38.0
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 9.4e-11 71.2 119 37.0
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 9.4e-11 71.2 132 34.8
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 1.2e-10 70.9 95 36.8
BraA06t23978Z Brassica rapa HOM05D002808 ORTHO05D003135 1.6e-10 70.5 113 36.3
A09p64840 Brassica napus HOM05D002808 ORTHO05D003135 2.1e-10 70.1 94 40.4
BraA09t41811Z Brassica rapa HOM05D002808 ORTHO05D003135 2.1e-10 70.1 94 40.4
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 2.1e-10 70.1 137 29.2
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 2.1e-10 70.1 102 37.3
BolC5t29676H Brassica oleracea HOM05D002808 ORTHO05D003135 2.7e-10 69.7 114 35.1
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 2.7e-10 69.7 109 35.8
A06p07770 Brassica napus HOM05D002808 ORTHO05D003135 3.6e-10 69.3 101 36.6
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 3.6e-10 69.3 100 31.0
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 3.6e-10 69.3 124 32.3
C05p09360 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-09 67.4 114 34.2
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 1.4e-09 67.4 84 39.3
SHI01937 Sapria himalayana HOM05D002808 ORTHO05D003135 1.8e-09 67.0 105 41.9
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 2.3e-09 66.6 102 38.2
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 2.3e-09 66.6 145 31.7
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 3.9e-09 65.9 118 33.9
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 3.9e-09 65.9 101 34.7
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 5.1e-09 65.5 99 31.3
MD05G1320400 Malus domestica HOM05D002808 ORTHO05D003135 5.1e-09 65.5 107 34.6
MD05G1320700 Malus domestica HOM05D002808 ORTHO05D003135 8.8e-09 64.7 155 31.0
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 2.0e-08 63.5 113 31.0
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 2.6e-08 63.2 99 31.3
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 2.6e-08 63.2 99 31.3
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 2.6e-08 63.2 79 41.8
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 2.6e-08 63.2 123 32.5
SEGI_22605 Sequoiadendron giganteum HOM05D002808 ORTHO05D003135 4.8e-07 58.9 84 38.1
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 3.1e-06 56.2 105 36.2


User provided reference genes

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