Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001820g0090 Nicotiana tabacum HOM05D007183 ORTHO05D008829 3.7e-196 688.0 329 100.0
Nitab4.5_0007319g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 1.2e-178 629.8 367 84.7
PGSC0003DMG400045796 Solanum tuberosum HOM05D007183 ORTHO05D008829 6.3e-164 580.9 366 76.5
Sopen02g023560 Solanum pennellii HOM05D007183 ORTHO05D008829 1.0e-161 573.5 366 76.2
Solyc02g078710.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 1.5e-157 559.7 366 74.6
TWI38G0385 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 2.9e-108 396.0 375 54.9
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 7.8e-106 387.9 372 54.0
Potri.011G046100 Populus trichocarpa HOM05D007183 ORTHO05D008829 2.1e-103 379.8 378 51.9
Potri.004G037400 Populus trichocarpa HOM05D007183 ORTHO05D008829 2.0e-101 373.2 379 52.0
Ciclev10017704m.g Citrus clementina HOM05D007183 ORTHO05D008829 4.9e-100 368.6 372 51.9
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 1.4e-99 367.1 373 52.0
TAR629G0430 Trochodendron aralioides HOM05D007183 ORTHO05D008829 1.9e-96 356.7 377 50.9
Manes.16G023400 Manihot esculenta HOM05D007183 ORTHO05D008829 3.3e-96 355.9 379 49.3
Manes.13G149600 Manihot esculenta HOM05D007183 ORTHO05D008829 4.3e-96 355.5 374 51.1
Oeu038241.1 Olea europaea HOM05D007183 ORTHO05D008829 3.7e-95 352.4 371 51.8
MD10G1300400 Malus domestica HOM05D007183 ORTHO05D008829 6.2e-95 351.7 375 49.3
MD05G1322500 Malus domestica HOM05D007183 ORTHO05D008829 1.1e-94 350.9 377 49.1
Thecc.02G174600 Theobroma cacao HOM05D007183 ORTHO05D008829 1.1e-94 350.9 369 50.7
Prupe.4G040300 Prunus persica HOM05D007183 ORTHO05D008829 4.0e-94 349.0 379 49.1
Lj6g0020427 Lotus japonicus HOM05D007183 ORTHO05D008829 1.5e-93 347.1 369 51.5
Gohir.A05G163250 Gossypium hirsutum HOM05D007183 ORTHO05D008829 4.9e-92 342.0 343 53.6
PGR004G0270 Punica granatum HOM05D007183 ORTHO05D008829 4.9e-92 342.0 378 48.9
Dinv03840 Davidia involucrata HOM05D007183 ORTHO05D008829 6.4e-92 341.7 356 48.9
GSVIVG01030561001 Vitis vinifera HOM05D007183 ORTHO05D008829 8.4e-92 341.3 364 51.1
GSVIVG01006947001 Vitis vinifera HOM05D007183 ORTHO05D008829 1.4e-91 340.5 358 50.0
Gohir.A10G022800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.0e-89 334.3 370 48.6
Aqoxy1G02644 Aquilegia oxysepala HOM05D007183 ORTHO05D008829 1.3e-89 334.0 374 48.9
Glyma.13G243900 Glycine max HOM05D007183 ORTHO05D008829 1.8e-89 333.6 378 48.7
Gohir.D02G181900 Gossypium hirsutum HOM05D007183 ORTHO05D008829 3.9e-89 332.4 360 48.1
Gorai.005G204400 Gossypium raimondii HOM05D007183 ORTHO05D008829 3.9e-89 332.4 360 48.1
Gorai.011G024700 Gossypium raimondii HOM05D007183 ORTHO05D008829 5.1e-89 332.0 370 47.8
Gohir.D10G023600 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.1e-88 330.9 370 48.1
Gorai.009G171300 Gossypium raimondii HOM05D007183 ORTHO05D008829 5.6e-88 328.6 381 48.8
Duzib235G0436 Durio zibethinus HOM05D007183 ORTHO05D008829 7.4e-88 328.2 364 49.5
arahy.Tifrunner.gnm1.ann1.B6W742 Arachis hypogaea HOM05D007183 ORTHO05D008829 9.6e-88 327.8 370 48.6
arahy.Tifrunner.gnm1.ann1.R2A86L Arachis hypogaea HOM05D007183 ORTHO05D008829 9.6e-88 327.8 366 48.6
Phvul.006G189500 Phaseolus vulgaris HOM05D007183 ORTHO05D008829 9.6e-88 327.8 375 48.3
Gohir.D05G166200 Gossypium hirsutum HOM05D007183 ORTHO05D008829 2.1e-87 326.6 381 48.8
Peaxi162Scf00007g00283 Petunia axillaris HOM05D007183 ORTHO05D008829 2.8e-87 326.2 334 50.6
arahy.Tifrunner.gnm1.ann1.CVYZ1N Arachis hypogaea HOM05D007183 ORTHO05D008829 3.7e-87 325.9 366 48.9
RcHm_v2.0_Chr5g0007471 Rosa chinensis HOM05D007183 ORTHO05D008829 3.7e-87 325.9 377 46.4
Cc05_g06690 Coffea canephora HOM05D007183 ORTHO05D008829 1.1e-86 324.3 367 45.2
PSO675G2267 Papaver somniferum HOM05D007183 ORTHO05D008829 2.4e-86 323.2 372 48.4
COL.COLO4_35412 Corchorus olitorius HOM05D007183 ORTHO05D008829 4.0e-86 322.4 333 49.5
Nitab4.5_0002370g0040 Nicotiana tabacum HOM05D007183 ORTHO05D008829 4.0e-86 322.4 339 49.3
FvH4_3g27971 Fragaria vesca HOM05D007183 ORTHO05D008829 1.2e-85 320.9 377 46.4
Medtr2g012790 Medicago truncatula HOM05D007183 ORTHO05D008829 2.0e-85 320.1 371 48.0
Psat1g207000 Pisum sativum HOM05D007183 ORTHO05D008829 2.0e-85 320.1 369 48.0
Hma1.2p1_0191F.1_g083390 Hydrangea macrophylla HOM05D007183 ORTHO05D008829 2.6e-85 319.7 365 47.7
ATR0693G416 Amborella trichopoda HOM05D007183 ORTHO05D008829 3.4e-85 319.3 373 45.0
Ca_00299_v3 Cicer arietinum L. HOM05D007183 ORTHO05D008829 3.4e-85 319.3 371 48.0
Haze_13111 Corylus avellana HOM05D007183 ORTHO05D008829 3.4e-85 319.3 345 47.0
VMungo0540G0277 Vigna mungo HOM05D007183 ORTHO05D008829 7.6e-85 318.2 375 46.7
TPR.G36730 Trifolium pratense HOM05D007183 ORTHO05D008829 1.7e-84 317.0 380 47.4
TPR.G36795 Trifolium pratense HOM05D007183 ORTHO05D008829 2.2e-84 316.6 371 48.2
PSO541G4014 Papaver somniferum HOM05D007183 ORTHO05D008829 8.4e-84 314.7 372 47.8
PGR042G2243 Punica granatum HOM05D007183 ORTHO05D008829 2.7e-82 309.7 366 47.3
Migut.M01164 Erythranthe guttata HOM05D007183 ORTHO05D008829 3.5e-82 309.3 369 48.0
Nitab4.5_0001871g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 1.3e-81 307.4 373 45.0
CANSAT35G0251 Cannabis sativa HOM05D007183 ORTHO05D008829 5.1e-81 305.4 369 46.3
HanXRQChr16g0517841 Helianthus annuus HOM05D007183 ORTHO05D008829 8.7e-81 304.7 353 45.0
Dinv40521 Davidia involucrata HOM05D007183 ORTHO05D008829 1.5e-80 303.9 341 48.7
Solyc10g008530.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 2.8e-79 299.7 338 45.9
arahy.Tifrunner.gnm1.ann1.EK8XNT Arachis hypogaea HOM05D007183 ORTHO05D008829 3.7e-79 299.3 355 47.3
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 3.7e-79 299.3 362 42.8
CsaV3_7G004260 Cucumis sativus L. HOM05D007183 ORTHO05D008829 3.7e-79 299.3 362 43.6
Haze_06540 Corylus avellana HOM05D007183 ORTHO05D008829 6.3e-79 298.5 365 45.8
Sed0021459 Sechium edule HOM05D007183 ORTHO05D008829 1.0e-76 291.2 356 43.3
Actinidia09880 Actinidia chinensis HOM05D007183 ORTHO05D008829 1.7e-76 290.4 361 44.0
Lj2P283T62 Lonicera japonica HOM05D007183 ORTHO05D008829 1.7e-76 290.4 267 55.1
CiPaw.09G053400 Carya illinoinensis HOM05D007183 ORTHO05D008829 2.2e-76 290.0 352 46.6
COL.COLO4_31536 Corchorus olitorius HOM05D007183 ORTHO05D008829 3.8e-76 289.3 298 50.7
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 8.5e-76 288.1 315 47.6
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 1.1e-75 287.7 363 43.0
Actinidia39436 Actinidia chinensis HOM05D007183 ORTHO05D008829 2.5e-75 286.6 367 45.2
Solyc07g054570.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 5.5e-75 285.4 375 43.7
Eucgr.E03363 Eucalyptus grandis HOM05D007183 ORTHO05D008829 9.4e-75 284.6 347 43.5
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 1.0e-73 281.2 357 42.6
GSVIVG01006336001 Vitis vinifera HOM05D007183 ORTHO05D008829 8.8e-73 278.1 296 50.0
Migut.H01046 Erythranthe guttata HOM05D007183 ORTHO05D008829 1.9e-72 276.9 361 43.8
Cfa000386 Carpinus fangiana HOM05D007183 ORTHO05D008829 3.3e-72 276.2 347 45.8
Eucgr.D00687 Eucalyptus grandis HOM05D007183 ORTHO05D008829 1.3e-71 274.2 395 38.7
Glyma.15G069800 Glycine max HOM05D007183 ORTHO05D008829 2.2e-71 273.5 269 52.8
Cpa.g.sc34.121 Carica papaya HOM05D007183 ORTHO05D008829 1.4e-70 270.8 269 52.4
MBI02_g37921_MAGBIO Magnolia biondii HOM05D007183 ORTHO05D008829 7.2e-67 258.5 294 45.2
Zm00001eb258250 Zea mays HOM05D007183 ORTHO05D008829 4.7e-66 255.8 398 39.2
MELO3C018752.2 Cucumis melo HOM05D007183 ORTHO05D008829 1.4e-65 254.2 288 45.1
PGSC0003DMG400042494 Solanum tuberosum HOM05D007183 ORTHO05D008829 3.0e-65 253.1 299 43.8
CAN.G996.14 Capsicum annuum HOM05D007183 ORTHO05D008829 3.3e-64 249.6 301 44.2
Eucgr.L02005 Eucalyptus grandis HOM05D007183 ORTHO05D008829 5.7e-64 248.8 276 46.7
Peaxi162Scf00812g00041 Petunia axillaris HOM05D007183 ORTHO05D008829 9.1e-62 241.5 170 68.8
ECA234G1429 Erigeron canadensis HOM05D007183 ORTHO05D000476 5.9e-61 238.8 367 39.0
Solyc08g068470.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 4.7e-58 229.2 302 43.4
CAN.G168.28 Capsicum annuum HOM05D007183 ORTHO05D008829 2.6e-56 223.4 277 44.0
SEGI_07341 Sequoiadendron giganteum HOM05D007183 ORTHO05D008829 5.7e-56 222.2 340 36.8
Cc00_g11490 Coffea canephora HOM05D007183 ORTHO05D008829 7.0e-54 215.3 266 45.5
SMO358G0266 Selaginella moellendorffii HOM05D007183 ORTHO05D008829 5.9e-45 185.7 353 32.3
DCAR_021231 Daucus carota HOM05D007183 ORTHO05D008829 3.8e-44 183.0 159 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3060 Anthoceros agrestis HOM05D007183 ORTHO05D008829 4.2e-43 179.5 329 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2587 Anthoceros agrestis HOM05D006800 ORTHO05D008478 1.2e-40 171.4 301 32.2
Lj8A115T58 Lonicera japonica HOM05D007183 ORTHO05D008829 2.6e-40 170.2 280 39.3
Eucgr.D00692 Eucalyptus grandis HOM05D007183 ORTHO05D008829 8.3e-39 165.2 311 33.8
Peaxi162Scf00608g00919 Petunia axillaris HOM05D007183 ORTHO05D008829 5.0e-28 129.4 177 39.0
Actinidia01436 Actinidia chinensis HOM05D007183 ORTHO05D008829 1.4e-22 111.3 108 51.9
SMO343G0007 Selaginella moellendorffii HOM05D000667 ORTHO05D008829 7.0e-14 82.4 187 29.4
Oeu058749.1 Olea europaea HOM05D007183 ORTHO05D008829 3.5e-13 80.1 81 51.9
Mapoly0811s0002 Marchantia polymorpha HOM05D007183 ORTHO05D008829 3.3e-11 73.6 256 25.4
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis HOM05D000667 ORTHO05D003095 2.1e-10 70.9 250 21.6
Pp3c9_7690 Physcomitrium patens HOM05D001337 ORTHO05D001281 1.8e-09 67.8 231 25.1
Sabra19G0114400 Salix brachista HOM05D007183 ORTHO05D008829 3.1e-09 67.0 53 58.5
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 4.0e-09 66.6 285 22.1
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 4.0e-09 66.6 344 22.4
Lj2g0026136 Lotus japonicus HOM05D003852 ORTHO05D003095 5.2e-09 66.2 292 24.0
Os02g0805400 Oryza sativa ssp. japonica HOM05D007183 ORTHO05D008829 2.6e-08 63.9 77 46.8
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 5.8e-08 62.8 137 32.8
A08p26500 Brassica napus HOM05D000667 ORTHO05D003843 7.5e-08 62.4 206 27.2
BraA08t34602Z Brassica rapa HOM05D000667 ORTHO05D003843 7.5e-08 62.4 206 27.2
Zm00001eb426430 Zea mays HOM05D007183 ORTHO05D008829 1.3e-07 61.6 73 47.9
Peaxi162Scf01158g00028 Petunia axillaris HOM05D003852 ORTHO05D003095 2.2e-07 60.8 173 27.2
Sed0002450 Sechium edule HOM05D000667 ORTHO05D003843 2.2e-07 60.8 142 31.7
MELO3C015811.2 Cucumis melo HOM05D003852 ORTHO05D003095 3.7e-07 60.1 158 28.5
MSTRG.18249 Avicennia marina HOM05D003852 ORTHO05D003095 4.9e-07 59.7 295 24.1
Cre03.g192350 Chlamydomonas reinhardtii HOM05D015546 ORTHO05D018311 1.4e-06 58.2 99 35.4
Cc01_g19260 Coffea canephora HOM05D003852 ORTHO05D003095 1.4e-06 58.2 296 22.6
SEGI_39821 Sequoiadendron giganteum HOM05D015546 ORTHO05D018311 1.4e-06 58.2 174 25.3
BcaC01g06953 Brassica carinata HOM05D000667 ORTHO05D003843 1.9e-06 57.8 146 25.3
BolC3t19668H Brassica oleracea HOM05D000667 ORTHO05D003843 1.9e-06 57.8 146 24.7
Sed0008186 Sechium edule HOM05D003852 ORTHO05D003095 1.9e-06 57.8 114 32.5
BcaC01g01614 Brassica carinata HOM05D000667 ORTHO05D003843 2.4e-06 57.4 145 24.8
A08p26300 Brassica napus HOM05D000667 ORTHO05D003843 2.4e-06 57.4 146 24.7
C03p73760 Brassica napus HOM05D000667 ORTHO05D003843 2.4e-06 57.4 146 24.7
BraA08t34581Z Brassica rapa HOM05D000667 ORTHO05D003843 2.4e-06 57.4 146 24.7
CsaV3_7G027930 Cucumis sativus L. HOM05D003852 ORTHO05D003095 2.4e-06 57.4 150 28.7
CsaV3_6G032320 Cucumis sativus L. HOM05D000667 ORTHO05D003843 3.2e-06 57.0 142 30.3
HanXRQChr06g0184991 Helianthus annuus HOM05D003569 ORTHO05D004178 5.4e-06 56.2 216 25.0
Hund09582 Selenicereus undatus HOM05D006360 ORTHO05D008045 7.1e-06 55.8 157 26.1
Aqoxy1G01690 Aquilegia oxysepala HOM05D000667 ORTHO05D004096 9.2e-06 55.5 139 26.6
Thhalv10008094m.g Eutrema salsugineum HOM05D000667 ORTHO05D003843 9.2e-06 55.5 150 24.0
Hund09505 Selenicereus undatus HOM05D003852 ORTHO05D003095 9.2e-06 55.5 107 35.5


User provided reference genes

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