Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001818g0080 Nicotiana tabacum HOM05D000045 ORTHO05D011303 2.4e-59 231.9 112 100.0
Nitab4.5_0003719g0040 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.1e-38 163.3 102 77.5
Nitab4.5_0002198g0020 Nicotiana tabacum HOM05D000045 ORTHO05D011303 5.3e-38 161.0 119 68.9
Nitab4.5_0002058g0060 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.1e-32 143.3 119 61.3
Peaxi162Scf00071g00158 Petunia axillaris HOM05D000045 ORTHO05D001346 1.7e-28 129.4 109 62.4
Peaxi162Scf00035g00514 Petunia axillaris HOM05D000045 ORTHO05D001346 1.4e-27 126.3 111 60.4
Nitab4.5_0000003g0180 Nicotiana tabacum HOM05D010342 ORTHO05D011303 5.7e-24 114.4 102 61.8
Nitab4.5_0001639g0130 Nicotiana tabacum HOM05D000045 ORTHO05D001346 6.5e-20 100.9 119 49.6
Nitab4.5_0001788g0030 Nicotiana tabacum HOM05D010342 ORTHO05D011303 1.0e-17 93.6 58 75.9
Peaxi162Scf00071g02210 Petunia axillaris HOM05D000045 ORTHO05D001346 2.3e-17 92.4 76 61.8
Peaxi162Scf00957g00236 Petunia axillaris HOM05D000045 ORTHO05D001346 2.3e-17 92.4 102 52.0
Peaxi162Scf00105g00011 Petunia axillaris HOM05D000045 ORTHO05D001346 1.5e-16 89.7 57 75.4
Nitab4.5_0008686g0050 Nicotiana tabacum HOM05D010342 ORTHO05D011303 2.2e-15 85.9 102 50.0
Dinv15361 Davidia involucrata HOM05D000045 ORTHO05D001346 4.5e-13 78.2 119 37.8
COL.COLO4_31922 Corchorus olitorius HOM05D000045 ORTHO05D001346 2.9e-12 75.5 119 35.3
TWI38G0684 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 5.0e-12 74.7 119 35.3
Atru.chr1.2310 Acer truncatum HOM05D000045 ORTHO05D001346 8.5e-12 73.9 119 34.5
Thecc.06G238300 Theobroma cacao HOM05D000045 ORTHO05D001346 8.5e-12 73.9 119 35.3
GSVIVG01003485001 Vitis vinifera HOM05D000045 ORTHO05D001346 8.5e-12 73.9 119 35.3
Gohir.A06G156100 Gossypium hirsutum HOM05D000045 ORTHO05D001346 1.1e-11 73.6 119 35.3
Gorai.010G189600 Gossypium raimondii HOM05D000045 ORTHO05D001346 1.1e-11 73.6 119 35.3
Gohir.D06G162400 Gossypium hirsutum HOM05D000045 ORTHO05D001346 1.5e-11 73.2 119 35.3
Potri.016G007300 Populus trichocarpa HOM05D000045 ORTHO05D001346 1.5e-11 73.2 119 36.1
Sabra16G0012100 Salix brachista HOM05D000045 ORTHO05D001346 1.5e-11 73.2 119 35.3
Migut.M01435 Erythranthe guttata HOM05D000045 ORTHO05D001346 2.5e-11 72.4 120 35.0
Nitab4.5_0000715g0100 Nicotiana tabacum HOM05D000045 ORTHO05D011303 3.2e-11 72.0 38 84.2
Manes.07G106900 Manihot esculenta HOM05D000045 ORTHO05D001346 4.2e-11 71.6 119 36.1
Prupe.4G006000 Prunus persica HOM05D000045 ORTHO05D001346 9.4e-11 70.5 119 34.5
Manes.13G062100 Manihot esculenta HOM05D000045 ORTHO05D001346 1.6e-10 69.7 119 36.1
Ciclev10014481m.g Citrus clementina HOM05D000045 ORTHO05D001346 2.1e-10 69.3 122 36.9
Sed0007669 Sechium edule HOM05D000045 ORTHO05D001346 8.0e-10 67.4 119 33.6
Actinidia11902 Actinidia chinensis HOM05D000045 ORTHO05D001346 1.0e-09 67.0 119 33.6
arahy.Tifrunner.gnm1.ann1.P1AWAH Arachis hypogaea HOM05D000045 ORTHO05D001346 1.4e-09 66.6 119 33.6
arahy.Tifrunner.gnm1.ann1.P37JDH Arachis hypogaea HOM05D000045 ORTHO05D001346 1.4e-09 66.6 119 33.6
TPR.G21798 Trifolium pratense HOM05D000045 ORTHO05D001346 1.4e-09 66.6 118 38.1
CSS0021592 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 1.8e-09 66.2 119 33.6
Rhsim02G0090900 Rhododendron simsii HOM05D000045 ORTHO05D001346 1.8e-09 66.2 119 32.8
RhsimUnG0212200 Rhododendron simsii HOM05D000045 ORTHO05D001346 1.8e-09 66.2 119 32.8
Eucgr.H00883 Eucalyptus grandis HOM05D000045 ORTHO05D001346 3.0e-09 65.5 119 33.6
QL05p068158 Quercus lobata HOM05D000045 ORTHO05D001346 3.0e-09 65.5 119 31.1
Potri.014G167000 Populus trichocarpa HOM05D000045 ORTHO05D001346 4.0e-09 65.1 119 31.9
GSVIVG01030079001 Vitis vinifera HOM05D000918 ORTHO05D001346 4.0e-09 65.1 119 31.9
COL.COLO4_20212 Corchorus olitorius HOM05D000045 ORTHO05D001346 5.2e-09 64.7 119 32.8
Sp2g20160 Schrenkiella parvula HOM05D000045 ORTHO05D001346 5.2e-09 64.7 119 32.8
CiPaw.09G107400 Carya illinoinensis HOM05D000045 ORTHO05D001346 6.8e-09 64.3 119 31.1
Nitab4.5_0000540g0240 Nicotiana tabacum HOM05D000045 ORTHO05D011303 6.8e-09 64.3 49 59.2
QL08p028000 Quercus lobata HOM05D000045 ORTHO05D001346 6.8e-09 64.3 119 34.5
ClCG01G021300 Citrullus lanatus HOM05D000045 ORTHO05D001346 8.8e-09 63.9 119 31.9
CsaV3_6G048310 Cucumis sativus L. HOM05D000045 ORTHO05D001346 8.8e-09 63.9 119 31.9
Prupe.3G198400 Prunus persica HOM05D000045 ORTHO05D001346 8.8e-09 63.9 119 33.6
Psat1g173360 Pisum sativum HOM05D000045 ORTHO05D001346 1.2e-08 63.5 120 31.7
PGR083G0689 Punica granatum HOM05D000045 ORTHO05D001346 1.2e-08 63.5 119 31.1
Sabra14G0127000 Salix brachista HOM05D000045 ORTHO05D001346 1.2e-08 63.5 119 31.1
Ah.01g002620 Amaranthus hybridus HOM05D000045 ORTHO05D001346 2.6e-08 62.4 122 29.5
Hma1.2p1_1324F.1_g275680 Hydrangea macrophylla HOM05D000045 ORTHO05D001346 2.6e-08 62.4 118 35.6
Phvul.006G140500 Phaseolus vulgaris HOM05D000045 ORTHO05D001346 3.4e-08 62.0 126 31.7
Thecc.04G196700 Theobroma cacao HOM05D000045 ORTHO05D001346 3.4e-08 62.0 119 32.8
VMungo0540G0282 Vigna mungo HOM05D000045 ORTHO05D001346 3.4e-08 62.0 119 30.3
A02p38390 Brassica napus HOM05D000045 ORTHO05D001346 4.4e-08 61.6 119 31.1
BraA02t08818Z Brassica rapa HOM05D000045 ORTHO05D001346 4.4e-08 61.6 119 31.1
Ca_00751_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 4.4e-08 61.6 117 30.8
TPR.G10574 Trifolium pratense HOM05D000045 ORTHO05D001346 4.4e-08 61.6 117 30.8
Eucgr.D01451 Eucalyptus grandis HOM05D000045 ORTHO05D001346 5.7e-08 61.2 120 31.7
vmacro15733 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 5.7e-08 61.2 119 32.8
Aqoxy1G04241 Aquilegia oxysepala HOM05D000045 ORTHO05D001346 7.5e-08 60.8 117 31.6
EL10Ac9g22684 Beta vulgaris HOM05D000045 ORTHO05D001346 7.5e-08 60.8 119 30.3
FvH4_6g40691 Fragaria vesca HOM05D000045 ORTHO05D001346 7.5e-08 60.8 122 32.0
Duzib268G0773 Durio zibethinus HOM05D000045 ORTHO05D001346 9.8e-08 60.5 119 31.9
Eucgr.D01455 Eucalyptus grandis HOM05D000045 ORTHO05D001346 1.3e-07 60.1 120 30.8
FAN14G4585 Fragaria x ananassa HOM05D000045 ORTHO05D001346 1.3e-07 60.1 122 32.0
Ciclev10014474m.g Citrus clementina HOM05D000045 ORTHO05D001346 1.7e-07 59.7 119 30.3
Gohir.D02G113500 Gossypium hirsutum HOM05D000045 ORTHO05D001346 1.7e-07 59.7 119 31.9
Gorai.005G129200 Gossypium raimondii HOM05D000045 ORTHO05D001346 1.7e-07 59.7 119 31.9
THA.LOC104816753 Tarenaya hassleriana HOM05D000045 ORTHO05D001346 1.7e-07 59.7 122 32.8
CARHR185140 Cardamine hirsuta HOM05D000045 ORTHO05D001346 2.2e-07 59.3 119 31.9
HanXRQChr04g0126581 Helianthus annuus HOM05D000045 ORTHO05D001346 2.2e-07 59.3 119 27.7
Lalb_Chr18g0057161 Lupinus albus HOM05D000045 ORTHO05D001346 2.2e-07 59.3 117 32.5
PGR042G0951 Punica granatum HOM05D000045 ORTHO05D001346 2.2e-07 59.3 120 30.0
Haze_12633 Corylus avellana HOM05D000045 ORTHO05D001346 2.8e-07 58.9 119 31.1
Lj1C796G8 Lonicera japonica HOM05D000045 ORTHO05D001346 2.8e-07 58.9 119 29.4
Lj5A281T52 Lonicera japonica HOM05D000045 ORTHO05D001346 2.8e-07 58.9 119 32.8
Rhsim11G0118700 Rhododendron simsii HOM05D000045 ORTHO05D001346 2.8e-07 58.9 119 33.6
CiPaw.03G281300 Carya illinoinensis HOM05D000045 ORTHO05D001346 3.7e-07 58.5 120 31.7
Haze_07002 Corylus avellana HOM05D000045 ORTHO05D001346 3.7e-07 58.5 117 32.5
Dinv26611 Davidia involucrata HOM05D000045 ORTHO05D001346 3.7e-07 58.5 119 30.3
Eucgr.L00168 Eucalyptus grandis HOM05D000045 ORTHO05D001346 3.7e-07 58.5 120 30.8
Hma1.2p1_0545F.1_g175960 Hydrangea macrophylla HOM05D000045 ORTHO05D001346 3.7e-07 58.5 119 29.4
vmacro12086 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 3.7e-07 58.5 119 30.3
A06p06890 Brassica napus HOM05D000045 ORTHO05D001346 4.8e-07 58.2 121 34.7
C02p57720 Brassica napus HOM05D000045 ORTHO05D001346 4.8e-07 58.2 119 30.3
C05p08370 Brassica napus HOM05D000045 ORTHO05D001346 4.8e-07 58.2 121 34.7
BolC2t11844H Brassica oleracea HOM05D000045 ORTHO05D001346 4.8e-07 58.2 119 30.3
BolC5t29588H Brassica oleracea HOM05D000045 ORTHO05D001346 4.8e-07 58.2 121 34.7
BraA06t23904Z Brassica rapa HOM05D000045 ORTHO05D001346 4.8e-07 58.2 121 34.7
CARHR010360 Cardamine hirsuta HOM05D000045 ORTHO05D001346 4.8e-07 58.2 121 34.7
Manes.10G110600 Manihot esculenta HOM05D000045 ORTHO05D001346 4.8e-07 58.2 120 33.3
Rhsim06G0176200 Rhododendron simsii HOM05D000045 ORTHO05D001346 4.8e-07 58.2 119 29.4
vmacro01687 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 4.8e-07 58.2 119 32.8
Aa31LG1G4680 Aethionema arabicum HOM05D000045 ORTHO05D001346 6.3e-07 57.8 119 31.9
Gohir.A03G095200 Gossypium hirsutum HOM05D000045 ORTHO05D001346 6.3e-07 57.8 119 31.1
Lj6g0023332 Lotus japonicus HOM05D000045 ORTHO05D001346 6.3e-07 57.8 120 32.5
AT5G28530 Arabidopsis thaliana HOM05D000045 ORTHO05D001346 8.3e-07 57.4 124 30.6
CSS0027308 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 8.3e-07 57.4 119 29.4
CSS0031139 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 8.3e-07 57.4 119 29.4
COL.COLO4_25306 Corchorus olitorius HOM05D000045 ORTHO05D001346 8.3e-07 57.4 119 31.9
Lsat_1_v5_gn_7_97020 Lactuca sativa HOM05D000045 ORTHO05D001346 8.3e-07 57.4 119 28.6
arahy.Tifrunner.gnm1.ann1.RBX3HB Arachis hypogaea HOM05D000045 ORTHO05D001346 1.1e-06 57.0 119 31.1
arahy.Tifrunner.gnm1.ann1.Z2KB3N Arachis hypogaea HOM05D000045 ORTHO05D001346 1.1e-06 57.0 119 31.1
Eucgr.G00085 Eucalyptus grandis HOM05D000045 ORTHO05D001346 1.1e-06 57.0 119 31.9
Glyma.09G012900 Glycine max HOM05D000045 ORTHO05D001346 1.1e-06 57.0 119 30.3
TAR627G0501 Trochodendron aralioides HOM05D000045 ORTHO05D001346 1.1e-06 57.0 119 32.8
Lj3g0003429 Lotus japonicus HOM05D000045 ORTHO05D001346 1.4e-06 56.6 120 32.5
MD09G1270100 Malus domestica HOM05D000045 ORTHO05D001346 1.4e-06 56.6 119 31.1
PSO675G0631 Papaver somniferum HOM05D000045 ORTHO05D001346 1.4e-06 56.6 119 31.1
Thecc.09G264500 Theobroma cacao HOM05D000045 ORTHO05D001346 1.4e-06 56.6 119 31.9
AL6G40570 Arabidopsis lyrata HOM05D000045 ORTHO05D001346 1.8e-06 56.2 119 31.1
RcHm_v2.0_Chr7g0219621 Rosa chinensis HOM05D000045 ORTHO05D001346 1.8e-06 56.2 121 31.4
Lj6g0000593 Lotus japonicus HOM05D000045 ORTHO05D001346 2.4e-06 55.8 120 32.5
Prupe.1G583000 Prunus persica HOM05D000045 ORTHO05D001346 2.4e-06 55.8 119 31.1
AL1G20950 Arabidopsis lyrata HOM05D000045 ORTHO05D001346 3.1e-06 55.5 121 33.1
Carub.0001s0965 Capsella rubella HOM05D000045 ORTHO05D001346 3.1e-06 55.5 121 33.1
RhsimUnG0201800 Rhododendron simsii HOM05D000045 ORTHO05D001346 3.1e-06 55.5 121 32.2
Cpa.g.sc113.2 Carica papaya HOM05D000045 ORTHO05D001346 4.1e-06 55.1 119 32.8
Ciclev10000456m.g Citrus clementina HOM05D000045 ORTHO05D001346 4.1e-06 55.1 119 31.1
Migut.B00731 Erythranthe guttata HOM05D000045 ORTHO05D001346 4.1e-06 55.1 120 29.2
Actinidia00157 Actinidia chinensis HOM05D000045 ORTHO05D001346 5.4e-06 54.7 102 33.3
Carub.0006s2582 Capsella rubella HOM05D000045 ORTHO05D001346 5.4e-06 54.7 119 31.1
CsaV3_5G014020 Cucumis sativus L. HOM05D000045 ORTHO05D001346 5.4e-06 54.7 120 32.5
Glyma.10G001400 Glycine max HOM05D000045 ORTHO05D001346 5.4e-06 54.7 119 31.1
Hund15409 Selenicereus undatus HOM05D000045 ORTHO05D001346 5.4e-06 54.7 121 29.8
TPR.G2092 Trifolium pratense HOM05D000045 ORTHO05D001346 5.4e-06 54.7 119 31.1
MSTRG.16475 Avicennia marina HOM05D000045 ORTHO05D001346 7.0e-06 54.3 122 32.0
Sp1g08850 Schrenkiella parvula HOM05D000045 ORTHO05D001346 7.0e-06 54.3 121 32.2
Atru.chr6.353 Acer truncatum HOM05D000045 ORTHO05D001346 9.1e-06 53.9 119 29.4
Aa31LG1G4400 Aethionema arabicum HOM05D000045 ORTHO05D001346 9.1e-06 53.9 119 26.1
AT1G10240 Arabidopsis thaliana HOM05D000045 ORTHO05D001346 9.1e-06 53.9 121 32.2
CiPaw.06G176100 Carya illinoinensis HOM05D000045 ORTHO05D001346 9.1e-06 53.9 119 31.1
Ca_00024_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 9.1e-06 53.9 120 30.8


User provided reference genes

Program Settings