Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.6e-250 867.1 418 100.0
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 4.2e-245 850.9 418 97.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 4.1e-216 754.6 412 87.4
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 8.5e-214 746.9 420 84.5
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.5e-210 735.3 424 83.3
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.1e-208 729.9 420 82.6
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 9.4e-197 690.3 421 77.2
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.0e-195 686.8 422 77.3
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 5.2e-195 684.5 413 78.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.5e-194 682.9 419 78.8
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 5.7e-194 681.0 420 76.4
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.3e-193 679.9 413 77.7
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.3e-193 679.9 423 78.0
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.8e-193 678.7 430 76.0
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.7e-193 678.3 423 76.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 1.8e-192 676.0 416 76.0
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.1e-192 675.2 413 77.2
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 7.0e-192 674.1 417 76.5
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.2e-191 673.3 430 75.8
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.2e-191 673.3 412 78.2
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-191 672.5 413 76.8
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 2.2e-190 669.1 408 79.2
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 6.5e-190 667.5 415 78.1
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 2.5e-189 665.6 413 75.3
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 3.2e-189 665.2 419 74.2
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 4.2e-189 664.8 427 75.2
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 5.5e-189 664.5 413 75.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 2.1e-188 662.5 426 73.7
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 2.7e-188 662.1 421 74.3
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 6.1e-188 661.0 420 74.3
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 8.0e-188 660.6 430 72.6
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 8.8e-187 657.1 417 73.1
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.2e-186 656.8 417 73.1
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.0e-186 656.0 417 72.9
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.6e-186 655.6 429 72.7
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 7.5e-186 654.1 421 74.6
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 7.5e-186 654.1 413 74.3
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.7e-185 651.7 413 74.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.4e-184 649.0 421 71.5
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 9.1e-184 647.1 422 76.3
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.5e-183 645.2 419 73.3
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.5e-183 645.2 419 74.5
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 7.7e-183 644.0 420 74.0
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 2.2e-182 642.5 421 71.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.5e-181 639.8 437 70.5
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.9e-181 639.4 422 72.3
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 6.1e-180 634.4 419 71.1
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 6.1e-180 634.4 424 71.0
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.0e-179 633.6 413 74.1
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 3.0e-179 632.1 431 70.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 6.8e-179 630.9 409 71.1
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-178 629.0 427 69.8
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 7.5e-178 627.5 413 72.6
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 9.8e-178 627.1 425 71.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.3e-177 624.4 417 71.2
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 8.3e-177 624.0 422 70.4
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.4e-176 623.2 425 70.6
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.8e-176 622.9 425 71.1
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.8e-176 622.9 420 72.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 2.4e-176 622.5 427 70.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 4.1e-176 621.7 424 70.3
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 5.4e-176 621.3 427 71.4
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.0e-176 620.9 417 70.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.5e-175 618.6 417 72.2
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 3.5e-175 618.6 427 70.3
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.5e-175 618.6 420 72.1
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 5.9e-175 617.8 425 70.8
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 7.7e-175 617.5 407 72.0
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.0e-174 617.1 414 70.5
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-174 616.7 425 70.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-174 616.3 426 70.4
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.7e-174 616.3 425 70.8
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.7e-174 616.3 447 68.0
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 8.5e-174 614.0 413 70.9
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.5e-173 613.2 412 70.4
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.5e-173 612.5 425 70.1
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.2e-173 612.1 410 70.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.2e-173 611.7 413 70.5
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 5.5e-173 611.3 422 69.0
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 5.5e-173 611.3 435 67.6
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 9.5e-173 610.5 409 69.9
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.7e-172 609.0 417 70.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 4.7e-172 608.2 414 69.6
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 4.7e-172 608.2 409 70.4
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.0e-171 607.1 424 68.9
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-171 606.3 413 70.7
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.8e-171 606.3 413 70.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.8e-171 606.3 415 69.6
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.0e-171 605.5 420 67.9
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.2e-171 604.7 411 70.3
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 4.4e-170 601.7 425 66.6
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.4e-168 594.7 420 67.9
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.4e-168 594.7 420 67.9
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.7e-166 589.7 407 69.3
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 2.3e-166 589.3 403 69.5
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-163 580.5 427 66.5
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.0e-163 578.6 421 64.4
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 5.2e-163 578.2 423 66.2
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.5e-162 576.6 421 64.1
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 2.6e-162 575.9 404 66.6
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.2e-161 572.8 432 63.9
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.9e-161 572.4 420 67.1
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.1e-160 568.5 425 64.9
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 3.6e-156 555.4 413 66.1
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.9e-153 545.8 423 61.5
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.6e-151 540.0 422 61.6
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 4.6e-151 538.5 405 63.2
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.3e-150 537.0 414 60.4
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.7e-150 536.6 429 61.8
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.3e-150 536.2 417 61.9
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.5e-149 533.5 424 59.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 2.8e-148 529.3 353 73.1
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 6.2e-148 528.1 431 60.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 4.0e-147 525.4 424 58.0
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.2e-145 519.6 451 57.9
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.9e-145 519.2 414 58.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.5e-133 479.6 408 55.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.3e-133 479.2 388 58.0
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 9.9e-130 467.6 403 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 4.5e-122 442.2 428 52.3
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 8.1e-116 421.4 307 66.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.4e-115 419.9 413 54.2
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.4e-114 416.0 403 51.1
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 7.6e-114 414.8 413 54.2
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 8.4e-113 411.4 295 65.4
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.8e-108 395.6 270 67.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.6e-106 389.8 408 46.6
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.0e-105 387.9 413 46.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.3e-101 372.9 340 52.4
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 3.3e-93 346.3 404 43.3
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 3.4e-90 336.3 246 69.5
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.5e-82 309.3 285 51.9
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.7e-81 307.4 238 64.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 3.8e-81 306.2 225 66.2
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 7.2e-64 248.8 140 82.9
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.6e-55 221.1 110 89.1
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 2.3e-54 217.2 157 65.0
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.1e-51 206.8 305 39.7
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.4e-51 206.1 136 69.1
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.8e-46 191.0 129 66.7
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 2.3e-41 174.1 159 57.9
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-40 170.6 140 61.4
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.4e-38 164.9 193 47.7
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.7e-36 157.9 125 63.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.9e-35 154.5 399 26.6
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-31 141.4 139 55.4
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-20 103.6 79 63.3
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-19 101.7 92 58.7
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.2e-18 98.6 73 64.4
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 2.7e-18 97.4 80 61.2
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 7.8e-18 95.9 85 57.6
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 7.8e-18 95.9 72 66.7
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.9e-17 93.6 82 53.7
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.1e-16 92.0 106 43.4
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.6e-15 88.2 146 32.9
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 4.7e-15 86.7 74 59.5
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 2.2e-12 77.8 43 79.1
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.9e-12 77.4 61 60.7
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-11 75.1 61 63.9
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 8.7e-09 65.9 106 34.9
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.1e-07 61.2 72 38.9
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.8e-07 60.8 50 56.0
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 8.1e-07 59.3 58 55.2
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-06 57.0 55 54.5


User provided reference genes

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