Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 5.1e-232 807.4 408 100.0
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.9e-198 694.5 372 95.2
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.8e-160 569.7 374 79.1
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.2e-156 557.0 364 80.2
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.9e-154 549.7 364 78.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.1e-141 507.3 364 77.2
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 9.3e-133 477.6 259 89.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.7e-121 439.1 371 62.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 6.3e-121 438.3 363 64.7
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 5.3e-120 435.3 355 63.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.0e-119 433.3 358 64.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 5.9e-119 431.8 361 64.3
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.7e-118 430.3 366 64.2
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.9e-118 429.5 343 64.7
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.9e-117 426.8 359 63.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.5e-117 426.4 361 61.8
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 5.5e-117 425.2 358 63.4
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-116 424.1 358 61.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 2.7e-116 422.9 357 62.7
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.8e-115 420.2 361 60.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.3e-115 419.9 358 61.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.1e-114 417.5 333 63.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.0e-114 416.8 356 60.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 2.6e-114 416.4 356 60.7
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.3e-114 416.0 359 59.9
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 4.4e-114 415.6 340 62.4
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.7e-114 415.2 327 65.1
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 2.2e-113 413.3 363 62.5
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 6.3e-113 411.8 356 61.8
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.4e-112 409.8 328 64.9
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 5.9e-111 405.2 340 62.1
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 7.7e-111 404.8 348 61.8
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.9e-109 400.2 388 56.7
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.2e-109 399.1 313 64.9
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.2e-108 397.5 323 62.8
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.6e-108 397.1 355 60.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.1e-108 396.7 356 59.6
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.0e-107 394.4 365 56.7
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 3.0e-107 392.9 340 60.6
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 6.3e-105 385.2 389 53.2
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 7.0e-104 381.7 345 57.1
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.6e-103 379.8 329 58.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.8e-102 375.9 338 57.7
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 5.0e-102 375.6 349 56.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 5.0e-102 375.6 252 72.6
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 8.5e-102 374.8 385 51.4
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 8.5e-102 374.8 340 58.5
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 4.7e-100 369.0 322 59.9
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 4.7e-100 369.0 354 56.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.0e-99 367.9 338 55.6
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.4e-99 367.5 346 56.9
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 4.0e-99 365.9 341 55.7
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.5e-98 364.0 332 57.2
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.6e-98 363.2 343 55.1
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 5.7e-98 362.1 350 56.9
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.2e-97 360.1 329 58.7
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 2.8e-97 359.8 335 56.1
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.8e-96 357.1 357 55.2
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 9.1e-96 354.8 309 60.8
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 4.5e-95 352.4 351 52.1
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.3e-94 350.9 354 54.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.9e-93 347.1 358 53.1
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.9e-93 347.1 344 53.5
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.5e-93 346.7 340 52.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.2e-93 346.3 381 52.8
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 5.5e-93 345.5 327 58.4
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 9.4e-93 344.7 329 57.1
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.2e-92 344.4 353 53.8
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.0e-92 341.7 384 50.0
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.4e-91 340.9 328 56.7
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.0e-91 339.3 364 52.2
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 5.2e-91 339.0 363 51.8
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.2e-90 337.8 369 52.0
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.7e-89 334.0 349 51.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.8e-88 330.5 371 49.6
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.8e-88 330.5 375 48.3
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 3.1e-88 329.7 354 52.3
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.5e-87 326.2 353 49.6
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 4.5e-87 325.9 371 49.3
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 4.5e-87 325.9 378 47.9
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 4.5e-87 325.9 361 53.5
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.3e-86 324.3 332 54.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 5.0e-86 322.4 377 48.8
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.9e-85 320.5 377 47.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 4.2e-85 319.3 368 48.6
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 9.5e-85 318.2 218 67.9
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 6.1e-84 315.5 372 47.0
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.0e-83 314.7 376 47.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 5.2e-83 312.4 329 50.5
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 8.9e-83 311.6 331 52.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.5e-82 310.8 332 50.6
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 9.8e-82 308.1 351 49.0
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.3e-81 307.8 365 46.8
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 7.0e-80 302.0 329 51.7
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 2.3e-78 297.0 371 44.7
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.9e-77 293.9 363 47.1
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.4e-75 287.7 305 51.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 5.8e-74 282.3 194 68.6
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.8e-74 281.6 322 47.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.3e-73 281.2 224 61.2
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.7e-70 270.8 337 47.2
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.0e-70 270.0 327 48.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 5.0e-70 269.2 327 49.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.5e-69 267.7 314 48.4
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.5e-69 266.9 348 43.7
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 7.3e-69 265.4 331 45.9
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 8.0e-68 261.9 281 48.4
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 5.2e-67 259.2 355 45.4
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.2e-66 258.1 356 44.1
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.2e-64 250.0 220 55.0
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.1e-63 247.3 282 47.2
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 7.8e-63 245.4 279 46.6
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.5e-61 241.1 251 56.2
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.6e-60 237.7 240 48.8
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-59 235.0 345 42.3
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.1e-52 210.7 243 45.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.8e-51 207.6 302 42.1
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 9.9e-50 201.8 241 53.1
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.4e-48 197.2 241 50.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 3.2e-48 196.8 155 63.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 5.6e-45 186.0 141 61.0
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 7.3e-45 185.7 223 47.1
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 4.0e-43 179.9 140 60.0
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.4e-40 169.5 140 57.1
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.5e-34 151.4 112 62.5
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 4.6e-31 139.8 186 52.2
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-27 128.3 101 57.4
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-25 121.7 101 52.5
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-24 117.9 95 57.9
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.5e-24 117.5 89 64.0
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.7e-23 114.0 198 39.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 5.1e-22 109.8 77 66.2
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 4.5e-18 96.7 149 48.3
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.4e-16 91.7 144 47.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.5e-13 80.9 55 67.3
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 4.3e-13 80.1 55 65.5
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.1e-11 75.5 55 61.8
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 2.0e-10 71.2 120 44.2
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.7e-10 69.3 69 50.7
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.7e-10 69.3 69 50.7
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.8e-09 67.0 46 69.6
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.0e-06 58.9 42 64.3
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 8.8e-06 55.8 43 55.8


User provided reference genes

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