Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-190 669.8 342 100.0
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 4.0e-121 438.7 348 68.7
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.4e-111 404.8 210 97.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 6.7e-108 394.8 350 63.4
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 3.3e-91 339.3 362 56.4
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.1e-89 332.8 358 57.0
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.4e-84 317.4 363 51.8
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.3e-82 308.5 358 51.7
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 5.3e-81 305.4 369 50.9
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.0e-80 303.5 357 51.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 2.2e-79 300.1 364 50.5
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.2e-79 300.1 373 49.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 3.8e-79 299.3 361 50.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.2e-78 296.2 358 48.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.2e-77 294.3 388 49.5
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 3.6e-77 292.7 355 51.0
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 8.0e-77 291.6 366 49.5
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 4.8e-74 282.3 360 49.2
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-73 280.8 363 47.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 7.0e-73 278.5 357 50.1
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.2e-71 273.5 369 50.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 3.8e-71 272.7 354 46.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 3.8e-71 272.7 357 47.3
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 5.0e-71 272.3 354 47.2
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.1e-70 271.2 366 48.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.1e-70 271.2 397 46.3
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.1e-70 271.2 353 47.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 3.2e-70 269.6 365 47.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 3.2e-70 269.6 354 47.7
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.5e-70 268.9 357 46.2
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 7.2e-70 268.5 207 67.1
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-69 267.3 368 46.7
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 6.7e-68 261.9 359 48.5
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 8.8e-68 261.5 365 46.3
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.5e-67 258.5 354 45.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.5e-67 258.5 356 48.6
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 9.7e-67 258.1 358 47.2
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 9.7e-67 258.1 360 46.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.7e-66 257.3 353 47.6
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.2e-66 256.9 353 45.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.2e-66 256.9 357 46.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 3.7e-66 256.1 351 45.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.4e-65 254.2 366 47.0
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 3.1e-65 253.1 253 54.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-64 251.1 259 53.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.0e-64 250.4 287 50.2
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 2.0e-64 250.4 195 64.6
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-63 247.7 259 53.7
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.3e-63 247.7 259 53.7
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.3e-63 247.7 259 53.3
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-63 247.3 203 63.1
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.7e-63 247.3 347 45.5
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.2e-63 246.9 259 52.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.8e-63 246.1 259 53.3
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.8e-63 246.1 259 53.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 8.5e-63 245.0 359 44.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.1e-62 244.6 233 60.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.5e-62 244.2 259 52.5
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.5e-62 243.4 358 43.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.2e-62 243.0 338 45.0
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 4.2e-62 242.7 353 44.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.2e-62 242.7 366 42.3
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.1e-61 240.4 338 44.4
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.7e-61 240.0 254 52.4
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.6e-61 239.6 260 51.2
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.8e-60 237.3 280 51.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.3e-60 236.9 315 47.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.0e-60 236.1 259 51.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 4.0e-60 236.1 259 50.2
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.0e-60 236.1 326 45.7
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 8.8e-60 235.0 193 59.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.5e-59 234.2 200 59.5
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 2.0e-59 233.8 352 42.6
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.0e-59 233.8 242 54.5
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 4.4e-59 232.6 360 44.2
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.5e-59 231.9 350 40.3
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 9.8e-59 231.5 283 47.0
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 7.0e-57 225.3 332 42.8
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.2e-56 224.6 363 43.3
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.0e-56 223.8 323 44.9
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.7e-56 223.4 365 43.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 7.7e-56 221.9 304 46.1
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 7.7e-56 221.9 304 46.1
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-52 210.3 354 41.8
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 8.9e-52 208.4 350 40.9
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 8.9e-52 208.4 354 41.2
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 5.7e-51 205.7 229 50.7
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 7.5e-51 205.3 203 51.7
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.2e-48 198.0 337 40.9
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-48 197.6 357 39.5
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-48 196.8 350 40.9
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 3.5e-48 196.4 350 38.9
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-47 194.9 351 41.6
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-47 194.1 364 39.3
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-46 191.0 350 39.4
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.5e-46 191.0 207 52.2
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 9.5e-46 188.3 199 48.7
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 8.9e-44 181.8 252 46.4
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.4e-41 173.7 356 36.2
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.2e-41 173.3 194 48.5
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.6e-40 171.0 210 45.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.6e-40 171.0 163 55.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.0e-40 170.6 254 39.0
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.7e-40 170.2 362 37.3
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.6e-39 165.6 198 48.5
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.3e-38 162.9 133 66.9
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 7.3e-38 162.2 206 42.2
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.6e-37 159.8 161 50.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.4e-36 157.9 209 43.1
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.4e-35 152.9 262 35.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.4e-35 152.9 255 38.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.9e-34 150.2 362 34.5
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 8.3e-34 148.7 265 36.2
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.2e-32 144.8 320 35.9
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.6e-32 144.4 272 35.3
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.7e-32 143.7 257 36.6
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 6.0e-32 142.5 349 32.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 7.8e-32 142.1 148 52.7
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 7.8e-32 142.1 203 40.4
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.8e-32 142.1 335 32.8
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-31 141.0 127 59.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.5e-30 137.1 185 40.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.5e-30 137.1 189 39.2
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 7.3e-30 135.6 216 38.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-29 134.8 183 38.8
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.6e-29 134.4 250 40.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-29 134.4 144 53.5
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.3e-28 130.6 150 50.0
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.0e-28 129.8 91 71.4
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 6.8e-28 129.0 108 62.0
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 7.5e-27 125.6 260 34.6
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-26 124.4 113 54.9
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.7e-26 123.2 218 38.1
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.4e-26 122.5 90 70.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.2e-24 118.2 165 43.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 3.0e-23 113.6 303 30.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.3e-22 110.2 155 40.0
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.8e-21 107.1 171 40.4
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-21 105.5 147 40.8
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-20 104.4 78 61.5
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.3e-18 98.2 67 68.7
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 8.4e-18 95.5 72 62.5
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 6.2e-13 79.3 72 58.3
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 3.1e-12 77.0 104 44.2
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.1e-08 64.3 172 33.1
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.7e-07 61.2 73 52.1
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.6e-07 59.3 46 56.5
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 2.5e-06 57.4 153 32.0


User provided reference genes

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