Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001796g0150 Nicotiana tabacum HOM05D002660 ORTHO05D011807 4.8e-79 297.7 148 100.0
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.6e-64 248.8 146 85.6
Nitab4.5_0001788g0190 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.4e-62 242.3 136 87.5
Nitab4.5_0000592g0110 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.3e-56 221.9 131 86.3
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 6.3e-55 217.6 147 76.2
Nitab4.5_0009709g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.8e-54 216.1 115 89.6
Nitab4.5_0027526g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.3e-54 214.5 123 87.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 2.4e-46 189.1 147 63.3
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 8.3e-39 164.1 127 69.3
Nitab4.5_0004300g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.3e-35 152.1 86 87.2
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-34 148.3 143 54.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-31 137.5 147 52.4
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-31 137.5 147 52.4
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-31 137.5 147 52.4
Nitab4.5_0026598g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 6.6e-28 127.9 67 89.6
Nitab4.5_0000172g1410 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.1e-27 127.1 147 51.7
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-25 118.6 96 63.5
Solyc00g142160.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 2.0e-24 116.3 87 70.1
CAN.G1126.7 Capsicum annuum HOM05D002660 ORTHO05D011807 2.9e-23 112.5 82 69.5
CAN.G200.4 Capsicum annuum HOM05D002660 ORTHO05D011807 2.9e-23 112.5 82 69.5
CAN.G1159.14 Capsicum annuum HOM05D002660 ORTHO05D011807 4.9e-23 111.7 82 69.5
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.4e-22 109.4 85 65.9
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.2e-22 109.0 84 66.7
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.2e-22 109.0 84 66.7
CAN.G134.22 Capsicum annuum HOM05D002660 ORTHO05D011807 5.4e-22 108.2 82 68.3
PGSC0003DMG400023071 Solanum tuberosum HOM05D002660 ORTHO05D011807 1.6e-21 106.7 85 64.7
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-21 106.3 100 53.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.5e-21 105.5 141 40.4
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 7.8e-21 104.4 78 67.9
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-20 103.6 106 57.5
Nitab4.5_0004300g0090 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.3e-20 102.8 54 85.2
Nitab4.5_0007225g0070 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.9e-20 102.1 47 95.7
Nitab4.5_0000172g2030 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.5e-19 99.4 120 52.5
Nitab4.5_0002716g0050 Nicotiana tabacum HOM05D002660 ORTHO05D011807 7.3e-19 97.8 47 91.5
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.2e-18 97.1 110 54.5
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 1.1e-17 94.0 148 41.2
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 1.1e-17 94.0 148 41.2
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.8e-17 91.3 65 70.8
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 1.5e-16 90.1 77 53.2
Solyc09g056110.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-16 90.1 84 56.0
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 2.6e-16 89.4 147 37.4
CAN.G70.3 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-16 89.0 74 64.9
Solyc11g030850.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 4.4e-16 88.6 76 64.5
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.7e-15 86.7 119 45.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.9e-15 85.1 146 36.3
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 6.0e-13 78.2 58 63.8
Dinv06709 Davidia involucrata HOM05D002660 ORTHO05D013121 4.3e-11 72.0 90 42.2
Lsat_1_v5_gn_8_93880 Lactuca sativa HOM05D002660 ORTHO05D013121 7.3e-11 71.2 125 37.6
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-10 68.9 149 34.2
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-10 68.9 149 34.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.6e-10 68.9 149 34.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.6e-10 68.9 149 34.2
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.1e-09 65.9 115 36.5
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 5.2e-09 65.1 115 34.8
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 6.8e-09 64.7 50 62.0
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 6.8e-09 64.7 50 62.0
Eucgr.J01097 Eucalyptus grandis HOM05D002660 ORTHO05D011807 8.9e-09 64.3 116 37.1
Sc05g0004270 Simmondsia chinensis HOM05D002660 ORTHO05D011807 1.5e-08 63.5 67 46.3
Actinidia11788 Actinidia chinensis HOM05D002660 ORTHO05D013121 2.0e-08 63.2 78 41.0
SGA_v2.0_scaffold245G44665 Striga asiatica HOM05D002660 ORTHO05D011807 3.4e-08 62.4 100 33.0
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-07 60.5 48 56.2
Actinidia34821 Actinidia chinensis HOM05D002660 ORTHO05D013121 1.7e-07 60.1 67 41.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.9e-07 59.3 48 56.2
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 3.8e-07 58.9 50 58.0
Ca_22165_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.9e-06 56.6 70 40.0
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 7.1e-06 54.7 147 27.9


User provided reference genes

Program Settings