Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001786g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.3e-64 249.6 124 100.0
Nitab4.5_0000132g0100 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.1e-23 110.5 74 74.3
Peaxi162Scf00163g00216 Petunia axillaris HOM05D002585 ORTHO05D002917 7.7e-22 107.5 74 70.3
Nitab4.5_0000963g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.2e-21 105.9 59 83.1
PGSC0003DMG400028171 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-21 105.5 74 68.9
Sopen10g033020 Solanum pennellii HOM05D002585 ORTHO05D002917 1.9e-20 102.8 74 66.2
Solyc10g083550.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.2e-20 101.7 74 64.9
CAN.G1138.22 Capsicum annuum HOM05D002585 ORTHO05D002917 1.6e-19 99.8 74 66.2
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 3.1e-15 85.5 58 65.5
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 4.1e-15 85.1 58 65.5
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 5.4e-15 84.7 87 49.4
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 9.1e-15 84.0 58 67.2
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.2e-14 83.6 58 67.2
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.2e-14 83.6 58 67.2
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.6e-14 83.2 58 63.8
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.6e-14 83.2 58 63.8
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 1.6e-14 83.2 58 63.8
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 2.0e-14 82.8 58 67.2
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 2.7e-14 82.4 58 65.5
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 2.7e-14 82.4 58 65.5
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 3.5e-14 82.0 58 65.5
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 3.5e-14 82.0 58 65.5
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.5e-14 82.0 58 65.5
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.5e-14 82.0 68 57.4
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 62.1
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 62.1
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 62.1
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 62.1
SHI27841 Sapria himalayana HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
PGSC0003DMG400028276 Solanum tuberosum HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 63.8
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Zm00001eb059870 Zea mays HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Zm00001eb162900 Zea mays HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Zm00001eb320250 Zea mays HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Zm00001eb398810 Zea mays HOM05D002585 ORTHO05D002917 5.9e-14 81.3 58 65.5
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 7.7e-14 80.9 58 60.3
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 1.0e-13 80.5 58 63.8
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 1.3e-13 80.1 58 62.1
Peaxi162Scf02002g00013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.3e-13 80.1 58 65.5
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.3e-13 80.1 58 62.1
Zm00001eb031620 Zea mays HOM05D002585 ORTHO05D002917 1.3e-13 80.1 58 63.8
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.7e-13 79.7 58 63.8
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 2.2e-13 79.3 58 62.1
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 2.2e-13 79.3 58 63.8
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.2e-13 79.3 58 63.8
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.2e-13 79.3 58 60.3
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.9e-13 79.0 87 48.3
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 2.9e-13 79.0 58 63.8
Lj3A991G23 Lonicera japonica HOM05D002585 ORTHO05D002917 2.9e-13 79.0 58 63.8
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 2.9e-13 79.0 80 46.2
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 2.9e-13 79.0 58 60.3
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 3.8e-13 78.6 58 60.3
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.8e-13 78.6 58 60.3
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 3.8e-13 78.6 58 60.3
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 6.5e-13 77.8 58 60.3
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.5e-13 77.8 58 60.3
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.5e-13 77.8 58 60.3
FAN09G3171 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.5e-13 77.8 58 60.3
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.5e-13 77.8 58 60.3
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 8.5e-13 77.4 58 56.9
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 8.5e-13 77.4 58 60.3
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 8.5e-13 77.4 58 62.1
MD00G1214800 Malus domestica HOM05D002585 ORTHO05D002917 1.1e-12 77.0 58 60.3
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.1e-12 77.0 58 60.3
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.5e-12 76.6 87 47.1
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 58.6
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 60.3
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 58.6
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 58.6
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 60.3
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 56.9
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 1.5e-12 76.6 58 58.6
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 1.9e-12 76.3 58 58.6
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 2.5e-12 75.9 58 56.9
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 2.5e-12 75.9 58 58.6
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 3.2e-12 75.5 58 56.9
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 5.5e-12 74.7 58 56.9
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 7.2e-12 74.3 58 56.9
ClCG04G009510 Citrullus lanatus HOM05D002585 ORTHO05D002917 7.2e-12 74.3 58 58.6
CsaV3_6G040130 Cucumis sativus L. HOM05D002585 ORTHO05D002917 7.2e-12 74.3 58 58.6
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 7.2e-12 74.3 58 56.9
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 7.2e-12 74.3 58 56.9
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.4e-12 73.9 58 56.9
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 9.4e-12 73.9 58 56.9
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.2e-11 73.6 85 45.9
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.2e-11 73.6 65 50.8
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 1.2e-11 73.6 58 56.9
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.6e-11 73.2 58 53.4
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.6e-11 73.2 58 60.3
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.1e-11 72.8 98 39.8
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.1e-11 72.8 57 54.4
MELO3C024486.2 Cucumis melo HOM05D002585 ORTHO05D002917 2.1e-11 72.8 58 55.2
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 2.1e-11 72.8 58 53.4
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 2.1e-11 72.8 57 59.6
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 2.1e-11 72.8 58 55.2
TPR.G30717 Trifolium pratense HOM05D002585 ORTHO05D002917 4.7e-11 71.6 58 56.9
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 6.1e-11 71.2 58 55.2
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 8.0e-11 70.9 57 56.1
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 8.0e-11 70.9 58 51.7
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 8.0e-11 70.9 58 56.9
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 8.0e-11 70.9 58 56.9
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 1.0e-10 70.5 58 53.4
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-10 70.1 85 44.7
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.4e-10 70.1 58 55.2
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.4e-10 70.1 58 55.2
Peaxi162Scf00110g00034 Petunia axillaris HOM05D002585 ORTHO05D002917 1.8e-10 69.7 54 59.3
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.8e-10 69.7 58 53.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.8e-10 69.7 54 59.3
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 2.3e-10 69.3 58 55.2
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 3.0e-10 68.9 57 56.1
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 4.0e-10 68.6 74 47.3
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.0e-10 68.6 58 51.7
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 6.8e-10 67.8 57 54.4
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 6.8e-10 67.8 57 54.4
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 6.8e-10 67.8 57 54.4
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 8.8e-10 67.4 53 58.5
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 8.8e-10 67.4 53 58.5
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 8.8e-10 67.4 57 54.4
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 8.8e-10 67.4 57 54.4
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 8.8e-10 67.4 57 54.4
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 8.8e-10 67.4 57 54.4
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 8.8e-10 67.4 57 54.4
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 8.8e-10 67.4 58 53.4
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 8.8e-10 67.4 58 55.2
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-09 67.0 57 49.1
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-09 67.0 57 49.1
Medtr0417s0020 Medicago truncatula HOM05D002585 ORTHO05D002917 1.5e-09 66.6 58 48.3
Nitab4.5_0003945g0150 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.5e-09 66.6 57 50.9
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 2.0e-09 66.2 58 56.9
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 2.0e-09 66.2 58 56.9
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 2.0e-09 66.2 57 50.9
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 2.0e-09 66.2 57 50.9
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 2.0e-09 66.2 57 50.9
ClCG00G005960 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.0e-09 66.2 58 51.7
Nitab4.5_0007292g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-09 66.2 57 50.9
PGSC0003DMG403009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.0e-09 66.2 58 48.3
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 3.4e-09 65.5 58 50.0
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 3.4e-09 65.5 58 51.7
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 3.4e-09 65.5 58 46.6
Zm00001eb056640 Zea mays HOM05D002585 ORTHO05D002917 7.5e-09 64.3 41 73.2
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 9.8e-09 63.9 58 50.0
Psat6g071560 Pisum sativum HOM05D002585 ORTHO05D002917 1.3e-08 63.5 58 50.0
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.3e-08 63.5 58 53.4
PGSC0003DMG400019011 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.7e-08 63.2 58 46.6
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.2e-08 62.8 58 50.0
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 2.2e-08 62.8 58 53.4
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 4.9e-08 61.6 75 41.3
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 6.3e-08 61.2 75 42.7
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 8.3e-08 60.8 58 51.7
Sopen01g025450 Solanum pennellii HOM05D002585 ORTHO05D002917 1.1e-07 60.5 58 46.6
Psat6g075720 Pisum sativum HOM05D002585 ORTHO05D002917 1.4e-07 60.1 58 51.7
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 2.4e-07 59.3 75 41.3
Medtr1g062430 Medicago truncatula HOM05D002585 ORTHO05D002917 3.1e-07 58.9 58 51.7
Medtr1g062470 Medicago truncatula HOM05D002585 ORTHO05D002917 3.1e-07 58.9 61 49.2
Psat6g075680 Pisum sativum HOM05D002585 ORTHO05D002917 4.1e-07 58.5 58 50.0
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 5.4e-07 58.2 58 51.7
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.0e-07 57.8 58 46.6
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 9.2e-07 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 9.2e-07 57.4 39 66.7
Peaxi162Scf00837g00009 Petunia axillaris HOM05D002585 ORTHO05D002917 9.2e-07 57.4 33 78.8
Nitab4.5_0000217g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.6e-06 56.6 57 49.1
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.5e-06 55.1 58 48.3
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.5e-06 55.1 74 43.2
Medtr3g035970 Medicago truncatula HOM05D002585 ORTHO05D002917 7.7e-06 54.3 58 51.7


User provided reference genes

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