Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001785g0030 Nicotiana tabacum HOM05D002963 ORTHO05D003302 2.4e-75 285.4 143 100.0
Nitab4.5_0000466g0030 Nicotiana tabacum HOM05D002963 ORTHO05D003302 8.5e-49 197.2 128 81.2
Solyc04g047670.2 Solanum lycopersicum HOM05D002963 ORTHO05D003302 3.6e-15 85.5 45 93.3
Sopen04g017740 Solanum pennellii HOM05D002963 ORTHO05D003302 3.6e-15 85.5 45 93.3
CAN.G66.5 Capsicum annuum HOM05D002963 ORTHO05D003302 1.5e-13 80.1 48 87.5
Manes.13G153900 Manihot esculenta HOM05D002963 ORTHO05D006865 2.4e-11 72.8 50 76.0
Peaxi162Scf00577g00315 Petunia axillaris HOM05D002963 ORTHO05D003302 3.2e-11 72.4 48 83.3
SalBow8G3179 Salvia bowleyana HOM05D002963 ORTHO05D003302 5.4e-11 71.6 45 73.3
Dinv03907 Davidia involucrata HOM05D002963 ORTHO05D003302 1.6e-10 70.1 47 76.6
Oeu046364.1 Olea europaea HOM05D002963 ORTHO05D003302 1.6e-10 70.1 47 76.6
SGA_v2.0_scaffold51G18850 Striga asiatica HOM05D002963 ORTHO05D003302 3.5e-10 68.9 63 58.7
CANSAT54G0177 Cannabis sativa HOM05D002963 ORTHO05D003302 4.6e-10 68.6 46 73.9
vmacro12738 Vaccinium macrocarpon HOM05D002963 ORTHO05D003302 4.6e-10 68.6 48 75.0
CiPaw.15G185200 Carya illinoinensis HOM05D002963 ORTHO05D003302 7.8e-10 67.8 50 76.0
Migut.H02546 Erythranthe guttata HOM05D002963 ORTHO05D003302 7.8e-10 67.8 45 77.8
MD15G1140900 Malus domestica HOM05D002963 ORTHO05D003302 1.0e-09 67.4 49 75.5
Nn5g27159 Nelumbo nucifera HOM05D002963 ORTHO05D003302 1.0e-09 67.4 45 73.3
MSTRG.23233 Avicennia marina HOM05D002963 ORTHO05D003302 1.3e-09 67.0 42 81.0
A06p34520 Brassica napus HOM05D002963 ORTHO05D003302 1.3e-09 67.0 48 70.8
C07p44030 Brassica napus HOM05D002963 ORTHO05D003302 1.3e-09 67.0 48 70.8
BolC7t44927H Brassica oleracea HOM05D002963 ORTHO05D003302 1.3e-09 67.0 48 70.8
BraA06t26380Z Brassica rapa HOM05D002963 ORTHO05D003302 1.3e-09 67.0 48 70.8
Thhalv10005010m.g Eutrema salsugineum HOM05D002963 ORTHO05D003302 1.3e-09 67.0 48 70.8
CARHR189940 Cardamine hirsuta HOM05D002963 ORTHO05D003302 1.7e-09 66.6 48 70.8
Ciclev10026599m.g Citrus clementina HOM05D002963 ORTHO05D003302 2.3e-09 66.2 49 69.4
PSO210G6138 Papaver somniferum HOM05D002963 ORTHO05D003302 2.3e-09 66.2 46 71.7
PSO447G0091 Papaver somniferum HOM05D002963 ORTHO05D003302 2.3e-09 66.2 46 71.7
Actinidia36576 Actinidia chinensis HOM05D002963 ORTHO05D003302 3.9e-09 65.5 48 75.0
Aa31LG11G2960 Aethionema arabicum HOM05D002963 ORTHO05D003302 8.6e-09 64.3 48 66.7
AL6G34830 Arabidopsis lyrata HOM05D002963 ORTHO05D003302 8.6e-09 64.3 48 66.7
AT5G23550 Arabidopsis thaliana HOM05D002963 ORTHO05D003302 8.6e-09 64.3 48 66.7
Carub.0006s2133 Capsella rubella HOM05D002963 ORTHO05D003302 8.6e-09 64.3 48 66.7
Rhsim08G0143900 Rhododendron simsii HOM05D002963 ORTHO05D003302 8.6e-09 64.3 47 72.3
HanXRQChr12g0381771 Helianthus annuus HOM05D002963 ORTHO05D003302 1.1e-08 63.9 48 66.7
Cc00_g14800 Coffea canephora HOM05D002963 ORTHO05D003302 1.5e-08 63.5 47 74.5
Lsat_1_v5_gn_5_71580 Lactuca sativa HOM05D002963 ORTHO05D003302 1.5e-08 63.5 47 66.0
Haze_19358 Corylus avellana HOM05D002963 ORTHO05D003302 1.9e-08 63.2 52 67.3
Gohir.A10G155700 Gossypium hirsutum HOM05D002963 ORTHO05D003302 1.9e-08 63.2 51 66.7
Gorai.011G120800 Gossypium raimondii HOM05D002963 ORTHO05D003302 1.9e-08 63.2 51 66.7
unitig_60.g25586 Utricularia gibba HOM05D002963 ORTHO05D003302 1.9e-08 63.2 45 71.1
CSS0028838 Camellia sinensis var. sinensis HOM05D002963 ORTHO05D003302 2.5e-08 62.8 48 70.8
TPR.G5840 Trifolium pratense HOM05D002963 ORTHO05D003302 2.5e-08 62.8 51 68.6
Prupe.4G288900 Prunus persica HOM05D002963 ORTHO05D003302 3.3e-08 62.4 51 62.7
Sed0020986 Sechium edule HOM05D002963 ORTHO05D003302 3.3e-08 62.4 52 63.5
Atru.chr3.1450 Acer truncatum HOM05D002963 ORTHO05D003302 4.3e-08 62.0 50 66.0
Duzib147G0755 Durio zibethinus HOM05D002963 ORTHO05D003302 4.3e-08 62.0 50 64.0
Sp2g23640 Schrenkiella parvula HOM05D002963 ORTHO05D003302 4.3e-08 62.0 48 64.6
THA.LOC104800518 Tarenaya hassleriana HOM05D002963 ORTHO05D003302 4.3e-08 62.0 48 60.4
TWI79G0624 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 4.3e-08 62.0 48 64.6
Psat1g113520 Pisum sativum HOM05D002963 ORTHO05D003302 5.6e-08 61.6 51 66.7
QL10p037816 Quercus lobata HOM05D002963 ORTHO05D003302 5.6e-08 61.6 48 66.7
ClCG02G000170 Citrullus lanatus HOM05D002963 ORTHO05D003302 7.3e-08 61.2 52 63.5
MELO3C023206.2 Cucumis melo HOM05D002963 ORTHO05D003302 7.3e-08 61.2 52 63.5
CsaV3_2G019650 Cucumis sativus L. HOM05D002963 ORTHO05D003302 7.3e-08 61.2 52 63.5
Hma1.2p1_0050F.1_g029060 Hydrangea macrophylla HOM05D002963 ORTHO05D003302 7.3e-08 61.2 46 67.4
Potri.004G135000 Populus trichocarpa HOM05D002963 ORTHO05D003302 7.3e-08 61.2 50 68.0
Gohir.D10G109700 Gossypium hirsutum HOM05D002963 ORTHO05D003302 9.5e-08 60.8 51 64.7
MBI06_g43030_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 9.5e-08 60.8 47 66.0
Sabra04G0083000 Salix brachista HOM05D002963 ORTHO05D003302 1.2e-07 60.5 50 70.0
Eucgr.I00021 Eucalyptus grandis HOM05D002963 ORTHO05D003302 1.6e-07 60.1 49 61.2
PGR119G1226 Punica granatum HOM05D002963 ORTHO05D003302 1.6e-07 60.1 48 64.6
Sc16g0009900 Simmondsia chinensis HOM05D002963 ORTHO05D003302 1.6e-07 60.1 46 67.4
VMungo0464G0114 Vigna mungo HOM05D002963 ORTHO05D003302 1.6e-07 60.1 51 66.7
BcaC04g23503 Brassica carinata HOM05D002963 ORTHO05D003302 2.1e-07 59.7 48 60.4
Glyma.09G156800 Glycine max HOM05D002963 ORTHO05D003302 2.1e-07 59.7 51 66.7
Lalb_Chr19g0131401 Lupinus albus HOM05D002963 ORTHO05D003302 2.1e-07 59.7 52 63.5
Phvul.004G132100 Phaseolus vulgaris HOM05D002963 ORTHO05D003302 2.1e-07 59.7 51 66.7
COL.COLO4_33525 Corchorus olitorius HOM05D002963 ORTHO05D003302 3.6e-07 58.9 50 60.0
GSVIVG01000249001 Vitis vinifera HOM05D002963 ORTHO05D003302 3.6e-07 58.9 50 62.0
Ah.02g118540 Amaranthus hybridus HOM05D002963 ORTHO05D003302 6.2e-07 58.2 50 62.0
BcaB04g19860 Brassica carinata HOM05D002963 ORTHO05D003302 6.2e-07 58.2 48 58.3
Thecc.01G146100 Theobroma cacao HOM05D002963 ORTHO05D003302 6.2e-07 58.2 50 60.0
Cfa020925 Carpinus fangiana HOM05D002963 ORTHO05D003302 8.1e-07 57.8 53 62.3
EL10Ac4g09731 Beta vulgaris HOM05D002963 ORTHO05D003302 1.1e-06 57.4 50 62.0
AUR62006958 Chenopodium quinoa HOM05D002963 ORTHO05D003302 1.1e-06 57.4 48 62.5
CDE02G1315 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 1.4e-06 57.0 45 62.2
Glyma.16G207600 Glycine max HOM05D002963 ORTHO05D003302 1.4e-06 57.0 51 62.7
Aqoxy5G01844 Aquilegia oxysepala HOM05D002963 ORTHO05D003302 1.8e-06 56.6 47 55.3
Ca_25249_v3 Cicer arietinum L. HOM05D002963 ORTHO05D003302 1.8e-06 56.6 48 58.3
Lj2g0002491 Lotus japonicus HOM05D002963 ORTHO05D003302 1.8e-06 56.6 51 60.8
arahy.Tifrunner.gnm1.ann1.1SSJ6X Arachis hypogaea HOM05D002963 ORTHO05D003302 3.1e-06 55.8 51 56.9
arahy.Tifrunner.gnm1.ann1.9IQG37 Arachis hypogaea HOM05D002963 ORTHO05D003302 3.1e-06 55.8 51 56.9
AUR62000607 Chenopodium quinoa HOM05D002963 ORTHO05D003302 3.1e-06 55.8 48 62.5
HPP92_016116 Vanilla planifolia HOM05D002963 ORTHO05D003302 3.1e-06 55.8 45 64.4
ATR1089G145 Amborella trichopoda HOM05D002963 ORTHO05D003302 4.0e-06 55.5 45 62.2
FAN28G1110 Fragaria x ananassa HOM05D000701 ORTHO05D003302 4.0e-06 55.5 55 56.4
Duzib187G1900 Durio zibethinus HOM05D002963 ORTHO05D003302 8.9e-06 54.3 50 60.0


User provided reference genes

Program Settings