Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.5e-275 950.7 486 100.0
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.9e-267 923.7 486 96.7
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.2e-264 916.0 486 96.1
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.1e-263 910.6 484 95.9
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 7.4e-262 906.7 486 95.5
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.6e-240 835.9 439 96.8
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 3.4e-230 801.6 489 83.0
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 7.7e-227 790.4 491 82.1
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 4.3e-225 784.6 486 81.5
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.2e-224 783.1 486 82.3
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.9e-223 776.9 491 81.5
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.6e-222 775.4 490 82.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 3.4e-222 775.0 491 80.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 5.7e-222 774.2 485 80.6
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.2e-221 772.3 491 79.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 6.4e-221 770.8 441 87.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 8.3e-221 770.4 475 81.9
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.1e-220 770.0 440 87.0
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.1e-220 770.0 491 80.9
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.1e-220 770.0 482 80.7
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.2e-220 768.5 449 85.1
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 5.4e-220 767.7 491 79.8
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 7.0e-220 767.3 486 80.9
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.7e-219 765.4 491 79.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.5e-219 765.0 445 86.5
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 7.8e-219 763.8 480 80.8
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.0e-218 763.5 492 79.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 1.0e-218 763.5 477 81.8
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.3e-218 763.1 489 79.6
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.3e-218 763.1 436 87.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.7e-218 762.7 487 80.1
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 2.3e-218 762.3 483 80.5
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.3e-218 762.3 490 79.0
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 5.0e-218 761.1 491 78.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 5.0e-218 761.1 455 83.5
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 6.6e-218 760.8 439 85.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-217 760.0 440 86.6
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.1e-217 760.0 492 77.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.9e-217 759.2 490 78.6
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.9e-217 759.2 439 85.9
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 2.5e-217 758.8 491 78.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 4.3e-217 758.1 491 79.2
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 5.6e-217 757.7 446 84.1
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.2e-216 756.5 445 85.4
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.7e-216 754.6 445 85.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 6.2e-216 754.2 443 85.1
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.4e-215 753.1 449 83.5
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.4e-215 753.1 434 86.4
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.4e-215 753.1 432 86.6
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.8e-215 752.7 388 97.9
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.0e-215 751.5 452 83.6
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.9e-215 750.4 468 79.3
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-214 750.0 435 86.2
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 7.5e-214 747.3 443 83.3
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.3e-213 746.5 490 77.6
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.3e-213 746.5 447 83.4
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.2e-213 745.7 440 84.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-213 745.0 440 85.7
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 3.7e-213 745.0 444 83.3
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 4.9e-213 744.6 441 83.4
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 6.4e-213 744.2 440 84.5
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 6.4e-213 744.2 437 86.3
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 8.3e-213 743.8 439 84.7
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.9e-212 742.7 437 84.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.4e-212 742.3 446 84.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 4.1e-212 741.5 445 81.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.1e-212 741.5 437 83.8
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.1e-212 741.5 437 83.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.6e-211 739.6 437 83.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.0e-211 739.2 443 82.6
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-211 738.8 437 83.5
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 2.7e-211 738.8 443 82.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 3.5e-211 738.4 456 81.8
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.5e-211 738.4 440 83.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 3.5e-211 738.4 449 82.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 6.0e-211 737.6 437 83.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 6.0e-211 737.6 437 83.5
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 6.0e-211 737.6 443 82.2
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 7.8e-211 737.3 443 82.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 7.8e-211 737.3 443 82.4
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 7.8e-211 737.3 436 85.3
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-210 736.9 466 79.2
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.0e-210 736.9 440 84.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.7e-210 736.1 481 78.0
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.3e-210 735.7 440 84.8
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 3.0e-210 735.3 436 83.3
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.0e-210 735.3 468 78.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 5.0e-210 734.6 487 77.4
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 8.6e-210 733.8 443 82.2
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 1.9e-209 732.6 439 84.1
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.5e-209 732.3 463 79.5
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.5e-209 732.3 439 83.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 3.3e-209 731.9 477 78.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.3e-209 731.5 489 77.3
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.6e-208 729.6 482 77.6
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 3.6e-208 728.4 432 83.3
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 3.6e-208 728.4 463 80.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 6.2e-208 727.6 436 83.9
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 8.1e-208 727.2 431 84.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.8e-207 726.1 432 83.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 3.4e-206 721.8 435 83.0
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.3e-205 719.9 431 82.8
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 4.9e-205 718.0 436 81.2
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.9e-204 716.1 492 75.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.4e-204 715.7 487 76.8
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.2e-204 715.3 486 75.9
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.1e-204 714.9 486 76.3
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.2e-203 713.4 435 82.1
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.1e-203 712.6 510 74.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.0e-202 710.3 435 81.6
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 6.6e-202 707.6 448 80.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 8.6e-202 707.2 435 80.9
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-201 704.9 486 75.5
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 8.1e-200 700.7 437 79.6
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.6e-198 695.7 441 77.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.2e-196 688.7 413 82.6
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-186 656.4 439 76.1
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.3e-185 651.7 432 74.5
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.9e-180 636.3 472 69.3
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.4e-180 636.0 432 73.8
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 9.3e-180 634.0 438 72.4
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.0e-174 616.3 427 72.8
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.6e-171 606.7 436 69.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.6e-168 596.7 427 70.5
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 4.5e-166 588.6 438 68.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.9e-165 585.1 362 79.8
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.4e-159 567.0 485 64.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.3e-157 560.5 428 68.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.5e-153 547.0 315 87.3
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-152 542.7 318 85.5
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 8.0e-123 444.9 249 90.4
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 5.2e-122 442.2 318 74.2
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 6.8e-122 441.8 233 95.3
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 8.6e-117 424.9 258 83.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.5e-116 422.2 450 50.7
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 3.6e-115 419.5 271 79.0
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 8.8e-114 414.8 330 67.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 9.2e-111 404.8 289 73.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.4e-95 352.4 405 53.8
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.6e-91 340.9 201 86.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.3e-85 321.2 182 86.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 2.0e-81 307.4 177 84.2
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.5e-76 291.2 182 81.3
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 7.3e-76 288.9 231 67.1
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.9e-71 274.2 421 41.3
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-65 254.6 217 63.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 4.5e-65 253.1 223 62.3
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 4.9e-64 249.6 217 62.7
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 5.4e-63 246.1 245 57.6
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 3.5e-62 243.4 296 45.3
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.1e-58 230.3 215 59.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.0e-57 227.6 124 88.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.8e-49 199.5 116 83.6
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.4e-42 178.3 89 96.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 2.4e-42 177.6 188 55.9
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-39 167.9 110 76.4
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.7e-32 144.8 160 50.6
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 3.7e-27 127.1 144 52.8
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.2e-25 122.1 133 44.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 4.5e-25 120.2 83 69.9
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 3.2e-23 114.0 67 85.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 7.2e-23 112.8 212 39.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.3e-20 104.0 125 49.6
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.7e-19 100.5 64 81.2
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 4.1e-18 97.1 75 64.0
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 6.5e-16 89.7 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 5.5e-15 86.7 66 66.7
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.4e-13 82.0 45 88.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.3e-12 77.4 49 79.6
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 4.4e-12 77.0 48 83.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.8e-11 74.3 69 63.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 6.3e-11 73.2 46 78.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 5.3e-10 70.1 72 59.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 4.5e-09 67.0 37 89.2
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 1.9e-07 61.6 52 69.2
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 9.4e-07 59.3 33 81.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 9.4e-07 59.3 71 49.3
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.6e-06 57.4 31 80.6
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 6.1e-06 56.6 60 51.7


User provided reference genes

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