Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.3e-42 176.0 93 100.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.5e-33 146.0 88 83.0
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 5.2e-31 137.5 89 80.9
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 1.4e-28 129.4 72 91.7
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 6.2e-24 114.0 89 69.7
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 8.9e-23 110.2 88 65.9
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 2.6e-22 108.6 89 66.3
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 9.9e-22 106.7 87 62.1
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 9.9e-22 106.7 88 63.6
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 9.9e-22 106.7 89 67.4
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 3.2e-20 101.7 88 59.1
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 5.4e-20 100.9 88 67.0
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 7.1e-20 100.5 87 59.8
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 9.2e-20 100.1 87 57.5
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 9.2e-20 100.1 88 58.0
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.1e-19 99.0 87 58.6
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 4.6e-19 97.8 87 59.8
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 5.1e-18 94.4 87 57.5
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 5.1e-18 94.4 89 53.9
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.3e-17 91.7 90 54.4
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 9.6e-17 90.1 88 55.7
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.1e-16 89.0 91 56.0
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 2.8e-16 88.6 92 48.9
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 4.7e-16 87.8 90 55.6
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 8.1e-16 87.0 73 58.9
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 8.1e-16 87.0 90 54.4
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.8e-15 85.9 90 54.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.8e-15 85.9 90 53.3
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 1.8e-15 85.9 89 50.6
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.8e-15 85.9 87 49.4
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 4.0e-15 84.7 89 51.7
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 8.9e-15 83.6 96 53.1
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.2e-14 83.2 89 50.6
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.4e-14 81.3 85 50.6
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 4.4e-14 81.3 81 50.6
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 5.8e-14 80.9 103 49.5
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 1.7e-13 79.3 89 50.6
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.2e-13 79.0 88 48.9
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 2.2e-13 79.0 85 52.9
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 2.9e-13 78.6 85 52.9
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 4.9e-13 77.8 88 55.7
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 6.4e-13 77.4 85 47.1
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 6.4e-13 77.4 85 47.1
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 6.4e-13 77.4 84 48.8
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 8.4e-13 77.0 85 47.1
PGSC0003DMG400008623 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.1e-12 76.6 85 52.9
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 1.4e-12 76.3 76 59.2
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.4e-12 76.3 65 60.0
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.4e-12 76.3 84 48.8
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 1.4e-12 76.3 86 50.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.9e-12 75.9 84 47.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 9.3e-12 73.6 82 50.0
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 3.5e-11 71.6 78 47.4
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 4.6e-11 71.2 82 47.6
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 7.8e-11 70.5 85 51.8
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 7.8e-11 70.5 86 44.2
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 7.8e-11 70.5 86 44.2
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.0e-10 70.1 92 44.6
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.7e-10 69.3 85 50.6
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 1.7e-10 69.3 92 41.3
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.3e-10 68.9 88 45.5
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 3.0e-10 68.6 80 45.0
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.9e-10 68.2 91 42.9
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 5.1e-10 67.8 83 49.4
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 6.6e-10 67.4 83 49.4
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 6.6e-10 67.4 75 50.7
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.9e-09 65.9 122 34.4
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.9e-09 65.9 83 44.6
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.9e-09 65.9 85 43.5
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 2.5e-09 65.5 73 49.3
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 2.5e-09 65.5 90 43.3
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 4.3e-09 64.7 109 37.6
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.3e-09 64.7 88 43.2
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 4.3e-09 64.7 62 58.1
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 4.3e-09 64.7 85 42.4
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 4.3e-09 64.7 85 42.4
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 4.3e-09 64.7 109 37.6
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 5.6e-09 64.3 73 47.9
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 7.3e-09 63.9 85 41.2
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 8.1e-08 60.5 85 40.0
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 8.1e-08 60.5 85 40.0
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 8.1e-08 60.5 94 44.7
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 109 35.8
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 109 35.8
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 109 35.8
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 2.4e-07 58.9 61 52.5
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 3.1e-07 58.5 61 49.2
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 5.3e-07 57.8 82 42.7
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 6.9e-07 57.4 110 36.4
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 6.9e-07 57.4 110 36.4
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 6.9e-07 57.4 89 44.9
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 9.0e-07 57.0 83 41.0
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 9.0e-07 57.0 83 41.0
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 9.0e-07 57.0 83 41.0
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 9.0e-07 57.0 83 41.0
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 9.0e-07 57.0 90 46.7
MELO3C023065.2 Cucumis melo HOM05D005842 ORTHO05D007077 1.5e-06 56.2 81 42.0
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 3.4e-06 55.1 109 35.8
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 4.4e-06 54.7 109 33.0
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 4.4e-06 54.7 85 44.7
Potri.001G172900 Populus trichocarpa HOM05D008630 ORTHO05D010727 5.8e-06 54.3 81 46.9
HPP92_007287 Vanilla planifolia HOM05D005842 ORTHO05D007077 5.8e-06 54.3 103 38.8
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 9.9e-06 53.5 109 33.9
Duzib192G0134 Durio zibethinus HOM05D008630 ORTHO05D010727 9.9e-06 53.5 83 43.4
Medtr1g045950 Medicago truncatula HOM05D005842 ORTHO05D007077 9.9e-06 53.5 35 68.6


User provided reference genes

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