Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.1e-131 473.4 244 100.0
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 5.1e-110 401.4 230 89.1
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.1e-67 260.8 189 72.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.8e-67 260.0 244 61.1
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.7e-65 253.4 248 63.3
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 4.5e-58 228.8 244 56.6
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.4e-46 190.7 238 50.4
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.4e-45 186.0 208 49.5
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 5.7e-45 185.3 210 49.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.7e-44 183.7 210 48.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 2.8e-44 183.0 252 44.0
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.1e-43 181.0 225 48.9
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.8e-43 180.3 243 46.9
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 7.0e-43 178.3 213 49.8
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.2e-42 177.6 232 47.8
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.0e-42 176.8 146 58.9
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.7e-42 176.4 246 44.3
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 3.5e-42 176.0 233 47.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.5e-42 175.6 184 52.2
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.0e-41 174.5 178 51.1
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.0e-41 174.5 208 50.5
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.3e-41 174.1 174 54.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.9e-41 172.9 198 46.0
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.8e-41 172.6 250 46.0
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 6.6e-41 171.8 223 49.8
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 6.6e-41 171.8 184 52.2
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 6.6e-41 171.8 209 49.3
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 2.5e-40 169.9 153 55.6
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 7.2e-40 168.3 248 45.6
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 7.2e-40 168.3 151 55.0
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.2e-39 167.5 252 42.1
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.2e-39 167.5 218 49.1
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.6e-39 167.2 197 50.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.1e-39 165.2 196 48.0
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 8.0e-39 164.9 240 43.3
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.4e-38 164.1 164 53.0
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 2.3e-38 163.3 194 47.9
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.3e-38 163.3 220 43.2
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 3.0e-38 162.9 162 54.3
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.0e-38 162.9 246 42.7
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 4.0e-38 162.5 237 46.0
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 5.2e-38 162.2 217 43.8
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.2e-37 161.0 195 49.2
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.2e-37 161.0 236 42.8
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.2e-37 161.0 170 51.8
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.2e-37 161.0 220 45.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.0e-37 160.2 188 47.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.0e-37 160.2 209 45.5
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 2.6e-37 159.8 231 41.1
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 2.6e-37 159.8 144 54.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.6e-37 159.8 199 47.7
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 7.5e-37 158.3 170 52.4
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 7.5e-37 158.3 199 47.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.7e-36 156.0 225 42.7
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 3.7e-36 156.0 179 45.8
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 4.9e-36 155.6 219 48.4
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 8.3e-36 154.8 205 45.9
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-34 150.2 140 57.9
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.0e-34 150.2 231 42.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.7e-34 149.8 214 42.1
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 4.5e-34 149.1 238 42.9
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 7.8e-34 148.3 169 51.5
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 1.7e-33 147.1 162 51.9
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.7e-33 147.1 153 53.6
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.3e-33 146.7 177 49.7
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 2.3e-33 146.7 139 56.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 2.3e-33 146.7 139 56.1
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.3e-33 146.7 230 43.9
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 2.9e-33 146.4 139 56.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.9e-32 143.7 178 46.6
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.5e-32 143.3 249 41.8
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.5e-32 143.3 215 44.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 3.3e-32 142.9 249 42.2
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 9.8e-29 131.3 179 45.3
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 8.3e-28 128.3 209 39.2
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.4e-27 127.5 193 40.4
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.4e-27 126.7 150 44.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 3.2e-27 126.3 194 41.2
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 7.0e-27 125.2 235 34.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.0e-25 121.3 188 38.8
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.3e-25 120.9 140 45.7
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.7e-25 120.6 153 42.5
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.7e-25 120.6 169 42.0
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.0e-25 119.8 154 42.2
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 5.0e-25 119.0 191 38.2
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 8.6e-25 118.2 181 38.7
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 8.6e-25 118.2 228 41.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.1e-24 117.9 129 45.0
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.5e-24 117.5 153 43.1
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.5e-24 117.5 140 44.3
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.5e-24 116.7 153 40.5
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.6e-24 115.5 184 34.8
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 5.6e-24 115.5 130 44.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 9.5e-24 114.8 156 42.3
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.2e-23 114.4 151 41.7
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.6e-23 114.0 153 40.5
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-23 114.0 169 39.1
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.6e-23 114.0 171 39.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.1e-23 113.6 130 43.1
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.8e-23 113.2 193 37.3
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.8e-23 113.2 193 37.3
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.8e-23 113.2 152 38.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 3.6e-23 112.8 162 38.3
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 4.7e-23 112.5 155 43.9
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 8.0e-23 111.7 150 40.7
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-22 111.3 153 40.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-22 110.9 162 38.9
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.4e-22 110.9 162 37.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 4.0e-22 109.4 158 39.2
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 4.0e-22 109.4 158 39.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.0e-22 109.4 161 39.8
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.2e-22 109.0 154 39.6
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 6.8e-22 108.6 159 38.4
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 8.9e-22 108.2 94 55.3
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-21 107.8 170 40.0
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-21 107.1 159 37.7
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.0e-21 107.1 136 41.9
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 2.0e-21 107.1 129 40.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.6e-21 106.7 158 38.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 9.8e-21 104.8 147 40.8
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.2e-20 103.6 120 44.2
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.2e-20 103.6 133 39.8
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.9e-20 103.2 151 39.1
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 6.4e-20 102.1 129 41.9
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 6.4e-20 102.1 151 39.1
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 8.3e-20 101.7 77 63.6
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.1e-19 101.3 151 35.1
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.4e-19 100.1 90 52.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.1e-19 99.4 145 35.9
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 2.1e-18 97.1 128 42.2
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 3.5e-18 96.3 130 39.2
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 4.6e-18 95.9 173 36.4
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 4.6e-18 95.9 173 36.4
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.0e-18 95.5 161 33.5
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 7.8e-18 95.1 158 36.1
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-17 94.4 126 38.9
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-17 94.4 174 36.2
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.3e-17 94.4 153 35.9
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.7e-17 94.0 156 34.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.7e-17 94.0 173 34.7
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-17 94.0 175 34.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.7e-17 94.0 175 34.9
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 3.0e-17 93.2 160 36.2
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 3.0e-17 93.2 160 36.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 5.1e-17 92.4 132 36.4
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 8.6e-17 91.7 143 37.1
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.5e-16 90.1 117 38.5
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.3e-16 89.7 126 39.7
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.3e-16 89.7 96 40.6
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 7.3e-16 88.6 121 36.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.8e-15 86.7 122 35.2
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 1.8e-14 84.0 88 53.4
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.3e-14 83.6 91 39.6
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 6.8e-14 82.0 95 43.2
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 5.8e-13 79.0 118 38.1
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 7.5e-13 78.6 135 36.3
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 4.9e-12 75.9 154 31.2
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 8.3e-12 75.1 103 39.8
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 7.1e-11 72.0 157 29.3
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.2e-10 71.2 108 38.9
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 8.6e-09 65.1 172 27.9
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.8e-07 60.1 60 43.3


User provided reference genes

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