Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.5e-122 441.4 247 100.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.2e-108 396.0 247 88.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.5e-98 361.7 250 78.4
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.3e-97 360.1 248 78.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.7e-97 359.8 232 83.6
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.7e-97 359.8 248 78.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.2e-96 355.1 236 80.1
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.6e-87 326.6 245 73.1
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.1e-83 313.9 243 71.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.4e-83 312.8 231 72.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-82 310.5 231 70.1
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-82 310.5 231 70.6
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.6e-82 310.1 231 70.1
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 5.9e-82 308.1 231 71.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.0e-81 307.4 231 70.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.9e-81 305.8 228 74.1
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 3.8e-81 305.4 231 71.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.3e-80 302.4 247 64.8
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.2e-80 301.2 228 72.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 7.2e-80 301.2 231 71.4
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 7.2e-80 301.2 231 71.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.5e-80 300.8 228 72.4
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 9.5e-80 300.8 245 67.3
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.8e-79 299.3 231 70.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.7e-79 298.5 245 64.9
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.1e-79 298.1 231 70.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 6.1e-79 298.1 245 66.5
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.1e-79 298.1 243 65.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 8.0e-79 297.7 247 65.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.4e-78 297.0 231 69.7
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-78 297.0 243 65.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.0e-78 295.8 245 64.5
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 5.2e-78 295.0 247 65.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 5.2e-78 295.0 247 64.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.5e-77 291.2 230 68.7
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 9.8e-77 290.8 231 68.0
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.2e-76 289.7 231 66.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.9e-76 288.5 231 68.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 8.3e-76 287.7 229 67.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 8.3e-76 287.7 247 66.0
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.1e-75 287.3 231 67.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 7.0e-75 284.6 227 67.0
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.2e-75 284.3 231 65.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-74 283.9 245 63.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 4.6e-74 282.0 231 67.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.8e-74 281.2 245 62.4
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.3e-73 280.4 231 65.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.3e-73 279.6 228 68.0
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.9e-73 279.3 230 65.7
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.9e-73 279.3 228 66.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.6e-73 278.1 233 64.8
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.5e-72 276.9 249 65.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.5e-72 276.9 231 66.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.5e-72 274.2 231 64.9
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.2e-71 273.9 227 64.3
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.7e-71 271.9 215 68.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 6.1e-71 271.6 231 61.5
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 8.0e-71 271.2 227 63.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.4e-70 270.4 228 63.2
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.3e-70 269.6 231 63.6
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-70 269.6 231 61.5
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.3e-70 269.6 286 55.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 8.9e-70 267.7 230 62.2
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 8.9e-70 267.7 229 61.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-69 267.3 231 63.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.2e-69 267.3 252 59.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.5e-69 266.9 230 63.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.4e-69 265.8 231 62.8
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 5.8e-69 265.0 231 60.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 5.8e-69 265.0 231 64.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 5.8e-69 265.0 224 62.1
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.5e-69 264.6 231 61.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 7.5e-69 264.6 230 61.7
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 7.5e-69 264.6 231 62.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 7.5e-69 264.6 231 60.2
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.3e-68 263.8 231 61.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.3e-68 263.8 231 60.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-68 263.5 231 59.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.7e-68 263.5 231 59.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.2e-68 263.1 231 61.9
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.9e-68 262.7 231 58.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.9e-68 262.7 231 60.6
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.7e-68 262.3 231 58.4
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.7e-68 262.3 231 58.9
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.7e-68 262.3 231 62.3
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.7e-68 262.3 231 59.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.9e-68 261.9 230 59.1
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 4.9e-68 261.9 229 63.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.9e-68 261.9 230 58.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 4.9e-68 261.9 228 61.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-67 260.8 231 58.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.9e-67 260.0 228 62.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.4e-67 259.6 230 58.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.6e-66 256.9 228 61.0
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.6e-66 256.9 231 58.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.0e-66 256.5 230 57.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.0e-66 256.5 163 82.2
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-66 256.5 231 58.9
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 4.6e-66 255.4 191 67.5
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.3e-65 253.1 245 58.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 8.6e-65 251.1 231 63.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.9e-64 250.0 230 57.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.3e-64 249.2 231 61.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.3e-64 249.2 231 61.9
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.1e-63 246.5 228 58.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.4e-62 243.8 231 59.3
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.8e-62 243.4 228 58.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.0e-62 242.3 244 59.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 5.2e-62 241.9 231 60.2
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.4e-61 239.2 230 54.3
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 9.8e-61 237.7 231 56.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.7e-58 229.6 161 72.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.0e-57 227.6 222 59.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 5.6e-56 221.9 240 50.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.2e-55 220.7 238 50.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 6.2e-55 218.4 163 66.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.4e-54 217.2 191 65.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.4e-53 212.2 228 53.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 7.6e-53 211.5 159 68.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-52 210.7 251 53.8
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 2.9e-52 209.5 177 65.0
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.9e-52 208.8 141 77.3
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 4.1e-51 205.7 155 67.7
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.2e-50 204.1 242 50.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.3e-49 199.9 145 71.7
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 6.6e-49 198.4 245 51.0
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-48 197.2 190 60.5
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.3e-48 196.1 177 62.7
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 3.1e-46 189.5 218 50.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.2e-43 179.5 230 47.4
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-39 166.8 228 50.0
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 5.3e-38 162.2 126 72.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.9e-38 161.8 193 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.5e-37 160.6 189 49.7
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.5e-37 160.6 141 64.5
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 8.4e-36 154.8 233 41.2
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.7e-34 149.8 116 67.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 6.0e-34 148.7 231 37.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 7.9e-34 148.3 141 61.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.0e-33 147.9 115 66.1
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.9e-32 143.7 190 46.8
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.9e-32 143.7 115 67.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.3e-32 142.5 228 40.8
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.3e-32 142.5 107 78.5
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.1e-30 136.3 231 38.1
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 9.9e-29 131.3 150 53.3
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-28 131.0 183 42.6
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.6e-26 124.0 90 72.2
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.3e-25 120.9 96 74.0
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.8e-25 120.6 181 43.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-21 107.1 231 34.6
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 3.4e-21 106.3 188 41.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.9e-20 103.2 165 41.8
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.4e-20 101.7 177 41.8
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.2e-18 97.8 133 48.9
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.7e-18 96.7 94 50.0
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.9e-17 92.8 70 68.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-16 90.9 58 72.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.3e-16 89.4 87 56.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 5.7e-16 89.0 103 48.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.8e-15 86.7 86 59.3
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.8e-15 86.7 86 59.3
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 9.0e-14 81.6 75 58.7
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 9.0e-14 81.6 85 52.9
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.2e-13 81.3 53 73.6
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-13 80.9 53 73.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-13 80.9 53 73.6
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.0e-13 80.5 89 51.7
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 7.6e-13 78.6 52 71.2
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.2e-12 77.0 87 52.9
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-12 77.0 53 67.9
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.2e-11 73.2 77 55.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 4.2e-11 72.8 100 46.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.7e-10 70.1 213 28.2
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.7e-10 70.1 213 28.2
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.7e-10 70.1 52 71.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.1e-09 65.9 78 50.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 7.4e-08 62.0 87 40.2
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.3e-07 61.2 204 27.0
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 6.3e-07 58.9 45 68.9
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 1.4e-06 57.8 53 52.8
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.4e-06 57.8 83 41.0
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 1.8e-06 57.4 44 65.9
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 5.3e-06 55.8 44 63.6


User provided reference genes

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