Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 2664.8 1359 100.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 2318.5 1375 88.7
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 0.0e+00 1727.2 1411 71.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 0.0e+00 1699.9 1411 71.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 0.0e+00 1653.6 1389 68.2
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 0.0e+00 1597.8 1411 67.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-215 753.8 1434 41.1
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.4e-193 679.5 1406 39.5
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 5.1e-183 646.4 1443 39.0
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 6.0e-176 622.9 1440 37.8
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.5e-158 564.3 1296 38.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.2e-155 555.4 1445 34.5
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 1.3e-154 552.0 1443 34.4
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 6.0e-152 543.1 1438 36.3
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.9e-151 540.4 1390 35.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.9e-151 540.4 1390 35.1
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.5e-150 537.7 1495 35.2
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.2e-147 528.9 1399 34.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.5e-147 528.5 1452 34.6
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 3.4e-147 527.3 1453 35.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.3e-143 514.6 1478 34.4
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.4e-142 509.6 1244 35.7
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 5.3e-140 503.4 1443 34.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.0e-139 501.5 1467 33.4
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 4.5e-139 500.4 1442 35.0
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 3.2e-137 494.2 1442 34.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 7.2e-137 493.0 1452 34.4
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.2e-136 492.3 1304 36.2
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 6.7e-135 486.5 1463 33.0
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.1e-134 485.7 1352 35.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 4.3e-134 483.8 1470 33.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.0e-131 474.9 1485 32.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.7e-130 471.9 1451 32.7
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.9e-130 471.1 1158 35.9
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 5.0e-130 470.3 1274 34.6
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 2.5e-129 468.0 1466 32.0
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 4.2e-129 467.2 1451 33.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 9.4e-129 466.1 1255 34.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 4.6e-128 463.8 1423 33.6
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-124 452.6 1464 31.8
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 3.1e-124 451.1 1473 31.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.1e-124 451.1 1485 32.5
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 3.1e-124 451.1 1435 32.6
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 6.9e-124 449.9 1464 32.8
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.9e-123 446.8 1449 32.0
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 5.9e-123 446.8 1327 33.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.3e-122 445.7 1447 32.2
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.2e-122 444.9 1472 32.6
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.5e-121 440.3 1485 31.6
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.0e-119 436.0 1474 31.6
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.3e-117 426.8 1465 31.6
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.4e-116 424.9 1498 31.3
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.2e-115 422.5 1224 33.0
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-113 416.0 1445 31.5
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 9.1e-108 396.4 1252 32.3
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 3.5e-107 394.4 733 39.4
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 8.5e-106 389.8 1430 31.0
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.1e-105 389.4 1128 33.5
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 6.3e-101 373.6 1531 30.1
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.0e-100 370.2 1318 31.4
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.8e-98 364.4 1167 33.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.2e-97 361.3 1316 31.5
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 2.7e-96 358.2 1364 30.6
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.5e-94 350.1 1235 31.4
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 7.5e-94 350.1 1171 32.9
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 9.8e-94 349.7 1349 30.5
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.1e-92 346.3 1232 31.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.4e-92 345.9 1231 31.8
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.8e-87 327.0 1428 30.3
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.9e-87 326.6 1423 29.9
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.0e-82 313.2 1337 29.9
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.9e-81 308.9 1065 30.7
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.4e-78 298.1 1206 31.2
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 2.7e-75 288.5 1494 26.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 3.5e-75 288.1 1454 28.5
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 7.8e-75 287.0 575 37.7
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.7e-74 285.8 1247 30.7
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.7e-74 285.8 890 32.6
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.1e-71 276.6 925 31.2
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.4e-71 276.2 800 34.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.5e-70 272.7 1188 29.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.3e-69 266.9 1282 28.1
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.2e-67 263.1 1340 26.9
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.1e-67 262.3 1140 29.6
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.0e-67 260.8 679 34.2
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-66 259.6 1117 29.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.6e-64 252.7 1126 29.1
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.8e-64 251.9 1353 26.2
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 4.4e-62 244.6 1114 28.7
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 7.6e-62 243.8 1304 27.7
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.9e-62 243.4 1141 28.7
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.9e-61 241.1 865 30.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.1e-60 240.0 416 39.7
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.2e-59 236.5 1170 28.9
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.9e-58 231.5 1120 28.5
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.5e-57 228.8 553 34.7
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 4.3e-57 228.0 367 41.7
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 6.2e-56 224.2 1195 26.5
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.6e-54 218.8 362 45.0
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.4e-52 213.0 514 33.3
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 6.0e-51 207.6 1146 27.6
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-49 202.6 899 28.4
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.3e-48 199.9 464 34.3
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 2.8e-48 198.7 879 28.3
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 3.6e-48 198.4 407 38.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.4e-47 196.4 462 35.3
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.8e-47 196.1 511 33.9
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.2e-46 193.4 526 33.8
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.7e-45 189.5 454 35.2
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 2.9e-45 188.7 582 31.3
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 4.9e-45 188.0 1146 25.8
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 8.4e-45 187.2 1118 28.1
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.1e-44 186.8 1122 26.5
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 7.1e-44 184.1 1110 26.7
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.2e-43 183.3 1115 28.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 7.9e-43 180.6 1183 26.5
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.0e-42 178.7 661 29.7
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 8.7e-42 177.2 1109 26.7
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-41 176.0 1114 27.5
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.3e-40 173.3 376 37.0
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.3e-39 167.9 972 26.2
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-38 166.8 325 36.9
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.6e-38 164.1 435 32.2
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.2e-37 162.5 336 37.5
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.9e-37 162.2 359 36.2
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.2e-36 158.7 371 35.6
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 4.2e-36 158.3 317 36.9
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 7.1e-36 157.5 328 36.9
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 6.0e-35 154.5 329 36.5
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 3.9e-34 151.8 316 37.0
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 8.7e-34 150.6 326 35.0
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 8.7e-34 150.6 1138 24.7
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-33 150.2 364 35.2
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.5e-33 149.1 366 36.1
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.3e-33 148.7 326 34.7
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-32 146.7 363 35.0
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 3.7e-32 145.2 1136 25.0
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 6.2e-32 144.4 952 26.6
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-31 143.7 325 33.8
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.4e-31 142.5 401 31.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-31 142.1 1128 24.5
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.0e-31 141.7 402 31.1
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 4.0e-31 141.7 402 31.1
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-30 139.8 387 32.6
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.6e-30 137.5 394 32.5
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-29 137.1 394 32.5
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-29 136.0 1172 24.0
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-29 135.6 390 32.6
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-28 133.7 355 32.4
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-28 132.9 1144 24.0
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-28 132.9 1144 24.0
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 7.9e-27 127.5 1160 24.7
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 7.9e-27 127.5 1160 24.7
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.9e-27 127.5 309 33.0
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.3e-26 125.9 263 36.5
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-25 122.9 1155 23.5
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 2.5e-25 122.5 366 30.3
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-23 117.1 1166 23.0
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.1e-23 115.2 384 28.6
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-22 113.2 209 38.3
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-22 113.2 209 38.3
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.1e-19 101.3 439 26.9
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.1e-18 98.2 213 34.7
CAN.G838.3 Capsicum annuum HOM05D003788 ORTHO05D043402 6.7e-18 97.8 104 58.7
CAN.G1483.9 Capsicum annuum HOM05D003788 ORTHO05D043402 1.5e-17 96.7 84 66.7
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.0e-13 84.0 333 28.2
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-13 83.6 124 44.4
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 5.1e-10 71.6 85 48.2
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 2.0e-09 69.7 46 65.2
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 5.7e-09 68.2 265 26.8
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.7e-08 66.6 198 29.3
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 4.8e-08 65.1 255 24.7
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 4.8e-08 65.1 151 32.5
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.2e-08 64.3 246 24.8
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 2.4e-07 62.8 140 30.7
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.1e-07 62.0 260 27.3
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.3e-07 61.6 40 65.0
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 1.2e-06 60.5 62 48.4
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 2.0e-06 59.7 45 57.8
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 2.0e-06 59.7 60 50.0
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 2.6e-06 59.3 44 56.8
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 7.7e-06 57.8 120 34.2
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 7.7e-06 57.8 260 24.6


User provided reference genes

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