Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.0e-273 943.0 468 100.0
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.8e-263 911.0 468 96.4
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.2e-242 842.0 468 89.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.5e-235 819.3 469 86.6
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.3e-235 818.1 469 87.0
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.3e-218 763.1 420 88.8
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.2e-218 762.3 469 82.3
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.8e-197 692.2 465 72.9
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.6e-197 691.8 469 72.3
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 8.0e-197 690.6 468 71.8
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 6.8e-196 687.6 468 72.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.1e-193 680.2 468 72.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.9e-193 679.5 468 70.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 7.0e-193 677.6 463 71.5
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.1e-192 676.0 468 71.6
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 6.0e-192 674.5 472 69.7
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.5e-190 669.1 466 69.7
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.3e-190 668.3 465 69.7
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.6e-189 665.2 472 69.3
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.8e-188 662.9 465 69.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.8e-188 662.9 467 69.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.0e-188 661.8 439 72.7
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.2e-188 661.4 468 69.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.0e-187 659.4 466 69.3
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 9.9e-187 657.1 464 68.8
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.9e-186 654.8 465 69.9
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 8.3e-186 654.1 467 68.7
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.2e-185 652.1 440 71.4
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.1e-185 651.0 465 68.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 2.1e-184 649.4 467 66.8
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 7.8e-184 647.5 470 65.7
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 6.6e-183 644.4 467 67.0
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.9e-182 642.9 468 66.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.5e-182 642.5 464 67.5
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.8e-181 639.0 467 64.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.4e-180 636.7 466 66.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.8e-180 634.4 465 66.5
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 6.8e-180 634.4 485 64.9
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.6e-179 632.5 465 64.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 5.8e-179 631.3 473 65.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.7e-178 629.8 469 66.1
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.2e-178 629.4 465 66.2
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 8.4e-178 627.5 465 67.3
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.4e-177 625.9 472 64.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.2e-177 625.5 468 66.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.4e-177 624.8 467 63.4
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 7.1e-177 624.4 464 65.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 9.2e-177 624.0 465 65.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-176 623.6 465 65.4
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.7e-176 622.5 465 65.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 5.1e-175 618.2 465 66.5
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 4.3e-174 615.1 439 67.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-173 612.8 419 70.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.6e-173 612.1 468 65.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.4e-172 610.1 467 62.5
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.8e-172 609.8 451 65.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.3e-172 608.2 462 64.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 6.9e-172 607.8 466 64.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.6e-171 604.4 467 61.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 6.4e-170 601.3 465 63.4
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 3.2e-169 599.0 463 62.9
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.0e-167 594.0 464 62.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.0e-167 592.4 468 61.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-166 590.5 464 62.1
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.3e-166 589.0 463 61.3
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.3e-166 587.8 468 61.1
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.3e-165 587.0 463 62.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.8e-165 585.1 460 62.2
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-165 585.1 461 62.5
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.1e-164 583.9 437 67.3
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.4e-163 578.9 466 61.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.8e-163 578.2 464 60.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-162 576.6 465 61.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-162 576.2 464 59.9
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-162 576.2 465 61.7
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.9e-162 575.9 467 60.4
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 8.4e-162 574.3 464 59.3
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.9e-161 573.2 467 61.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-161 572.4 465 61.3
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-161 572.4 465 61.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-161 571.2 465 61.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-160 570.1 464 59.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.5e-160 568.9 459 58.8
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.6e-160 568.5 459 59.5
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 7.9e-160 567.8 463 61.6
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.9e-158 563.1 465 60.6
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.3e-158 562.4 465 58.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 9.6e-158 560.8 459 58.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-157 558.5 459 58.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 8.1e-157 557.8 459 58.2
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-156 556.2 458 58.1
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.9e-156 554.7 459 59.5
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.0e-155 553.1 438 62.1
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-152 542.7 492 55.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 6.0e-152 541.6 460 58.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.0e-151 540.8 442 59.5
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-151 539.7 431 58.9
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.9e-151 538.9 459 59.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.1e-151 538.5 461 55.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 4.3e-150 535.4 490 58.8
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-149 533.5 435 57.7
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 6.5e-146 521.5 437 57.7
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 9.3e-145 517.7 468 56.2
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-144 516.9 464 56.2
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.0e-143 514.2 343 72.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-143 513.8 494 53.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.3e-143 513.1 469 53.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-142 510.4 439 56.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.4e-140 503.1 508 53.3
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.4e-140 503.1 453 53.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.5e-138 495.0 445 56.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.4e-135 487.3 424 58.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-135 485.7 460 55.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 5.1e-135 485.3 461 52.1
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.7e-133 480.3 464 56.0
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 5.3e-132 475.3 360 63.6
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-128 464.2 388 58.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 7.4e-126 454.9 364 59.1
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 9.1e-124 448.0 459 53.2
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-121 439.9 446 53.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.1e-116 422.9 504 46.0
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 7.0e-100 368.6 470 43.2
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.8e-87 327.4 407 42.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 4.9e-85 319.3 432 41.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-84 316.2 255 63.9
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.7e-74 284.3 271 51.3
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.1e-73 281.6 190 71.6
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-72 277.7 200 69.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.8e-72 276.9 200 69.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-70 271.2 199 68.8
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-63 248.4 225 55.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 5.8e-54 216.1 384 38.0
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.2e-51 208.4 145 64.1
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-51 205.7 225 50.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-49 199.5 222 49.1
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-45 186.4 316 37.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-38 164.1 151 55.0
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 6.5e-37 159.5 110 63.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-33 145.6 177 46.9
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-30 138.7 165 45.5
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.5e-30 136.7 116 61.2
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.9e-29 134.0 71 78.9
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 5.0e-29 133.3 213 39.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.4e-28 131.7 115 57.4
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.8e-26 124.8 173 44.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-24 118.6 213 39.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.6e-24 118.2 90 64.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-21 108.6 144 43.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.9e-21 107.5 93 63.4
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 5.0e-21 106.7 83 62.7
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 6.5e-21 106.3 144 42.4
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.6e-19 101.7 117 49.6
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 3.6e-19 100.5 77 55.8
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-19 99.4 216 37.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-19 99.4 77 55.8
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 2.3e-18 97.8 98 50.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-18 97.1 132 43.2
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 7.4e-17 92.8 54 66.7
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-16 89.7 74 52.7
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-15 89.0 121 43.8
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.4e-15 87.8 54 72.2
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.1e-15 87.0 116 41.4
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.0e-13 82.4 51 74.5
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-12 79.0 54 61.1
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-12 78.6 200 28.5
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.5e-12 77.8 69 53.6
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.2e-12 76.3 195 28.7
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.0e-10 70.9 184 27.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-07 61.6 64 48.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-07 61.2 81 38.3
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.1e-07 60.8 92 37.0
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.1e-07 60.8 98 38.8
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.9e-06 56.6 64 43.8


User provided reference genes

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