Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.4e-61 238.0 111 100.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.3e-57 225.3 106 100.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.8e-55 218.4 106 96.2
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.1e-54 216.5 106 95.3
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.1e-54 216.5 106 95.3
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.1e-54 214.9 105 95.2
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 8.9e-54 213.4 106 93.4
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.3e-48 194.9 104 85.6
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.8e-47 191.8 103 85.4
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.6e-47 191.4 103 83.5
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 8.1e-47 190.3 104 82.7
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.4e-46 189.5 103 82.5
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.1e-46 188.3 104 82.7
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.0e-46 188.0 104 80.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 4.0e-46 188.0 104 81.7
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.0e-46 188.0 104 81.7
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.0e-46 188.0 104 81.7
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.0e-46 188.0 103 82.5
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 80.0
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 6.9e-46 187.2 104 80.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 6.9e-46 187.2 104 81.7
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-45 186.4 105 78.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.2e-45 186.4 104 80.8
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.5e-45 186.0 104 79.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.0e-45 185.7 103 81.6
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.6e-45 185.3 104 78.8
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.4e-45 184.9 104 80.8
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.4e-45 184.5 105 77.1
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 7.6e-45 183.7 104 78.8
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 78.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 77.9
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 76.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.7e-44 182.6 103 81.6
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.2e-44 182.2 105 77.1
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.2e-44 182.2 104 78.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.2e-44 182.2 104 77.9
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.9e-44 181.8 104 79.8
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 2.9e-44 181.8 104 78.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.9e-44 181.8 103 80.6
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.8e-44 181.4 104 76.9
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 6.4e-44 180.6 104 77.9
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.4e-44 180.6 104 77.9
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.4e-44 180.6 104 77.9
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 8.4e-44 180.3 104 78.8
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 76.9
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 76.9
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.4e-43 179.5 109 75.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.9e-43 179.1 104 76.0
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.9e-43 179.1 104 78.8
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 75.2
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.4e-43 178.7 103 78.6
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 76.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 75.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 76.9
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.2e-43 177.9 104 76.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.2e-43 177.9 105 74.3
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.4e-43 177.6 105 77.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.0
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 5.4e-43 177.6 104 76.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 5.4e-43 177.6 103 75.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 7.1e-43 177.2 104 76.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 7.1e-43 177.2 104 76.0
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 7.1e-43 177.2 104 76.0
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.1e-43 177.2 104 76.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 7.1e-43 177.2 106 76.4
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 9.3e-43 176.8 104 75.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 9.3e-43 176.8 103 77.7
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 74.3
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.6e-42 176.0 103 75.7
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.6e-42 176.0 103 75.7
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 75.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 76.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 75.0
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.1e-42 175.6 104 74.0
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.7e-42 175.3 105 73.3
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.7e-42 175.3 103 74.8
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.7e-42 175.3 103 74.8
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 3.5e-42 174.9 104 76.9
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 3.5e-42 174.9 103 75.7
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.5e-42 174.9 104 74.0
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.5e-42 174.9 104 74.0
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.5e-42 174.9 102 76.5
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 3.5e-42 174.9 103 76.7
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 4.6e-42 174.5 103 75.7
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 4.6e-42 174.5 103 75.7
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.6e-42 174.5 103 75.7
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.0e-42 174.1 104 75.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.0e-42 174.1 103 75.7
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 6.0e-42 174.1 103 75.7
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 7.8e-42 173.7 104 74.0
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 7.8e-42 173.7 98 79.6
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 7.8e-42 173.7 103 73.8
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.0e-41 173.3 103 74.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.0e-41 173.3 104 75.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 74.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.7e-41 172.6 103 75.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 73.1
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.0e-41 171.8 102 75.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.0e-41 171.8 102 75.5
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.9e-41 171.4 98 76.5
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.9e-41 171.4 102 74.5
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.9e-41 171.4 104 73.1
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 5.1e-41 171.0 94 78.7
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.1e-41 171.0 105 71.4
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 6.6e-41 170.6 86 87.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 8.7e-41 170.2 104 73.1
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 74.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 71.2
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.5e-40 169.5 94 79.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 72.1
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 71.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 71.2
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 3.3e-40 168.3 101 73.3
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.3e-40 167.9 103 71.8
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 4.3e-40 167.9 109 72.5
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 7.3e-40 167.2 104 69.2
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-39 166.4 104 69.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.6e-39 166.0 104 70.2
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 69.2
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 70.2
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.6e-39 164.9 104 68.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 3.6e-39 164.9 105 70.5
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 3.6e-39 164.9 103 68.9
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 4.8e-39 164.5 106 67.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.2e-39 164.1 104 68.3
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 6.2e-39 164.1 105 69.5
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 8.1e-39 163.7 104 68.3
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-38 163.3 104 70.2
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.1e-38 161.8 105 68.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.3e-38 161.0 166 51.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 9.0e-38 160.2 104 66.3
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.4e-37 158.3 86 79.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.9e-35 152.5 94 69.1
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 6.7e-33 144.1 82 79.3
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.5e-32 142.9 103 65.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 5.6e-32 141.0 73 79.5
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 9.6e-32 140.2 94 64.9
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.1e-31 139.0 101 62.4
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.7e-31 138.3 105 61.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 4.0e-30 134.8 93 66.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.0e-30 134.8 101 62.4
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.2e-29 133.3 82 73.2
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-29 133.3 70 78.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.0e-29 132.5 80 73.8
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 6.0e-26 120.9 73 74.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 3.0e-25 118.6 94 52.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.1e-22 110.2 63 82.5
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.4e-22 109.8 67 77.6
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.3e-22 107.8 71 70.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.0e-20 103.6 91 49.5
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.9e-20 101.3 60 78.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 6.5e-20 100.9 69 68.1
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.1e-19 100.1 63 74.6
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.5e-19 99.0 63 73.0
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.6e-18 96.3 59 74.6
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 7.9e-18 94.0 57 75.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.3e-17 92.4 106 50.0
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.1e-16 90.1 90 42.2
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.5e-16 89.7 55 72.7
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 4.8e-15 84.7 46 76.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.3e-15 84.3 47 80.9
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.9e-14 80.9 65 60.0
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.5e-13 79.7 52 59.6
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 8.5e-12 73.9 45 71.1
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 4.1e-06 55.1 35 74.3


User provided reference genes

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