Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.1e-236 822.0 418 100.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 6.9e-224 780.4 418 94.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.5e-197 692.2 421 84.1
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.4e-195 686.4 419 84.2
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.8e-195 686.0 419 84.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.3e-195 685.6 421 83.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.4e-192 676.4 420 82.4
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.7e-167 592.4 410 77.1
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 8.9e-163 577.4 415 74.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.2e-161 572.8 408 74.0
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.6e-159 566.6 418 72.5
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.0e-159 566.2 408 73.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.9e-159 564.7 418 72.2
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.6e-156 555.4 410 71.2
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.7e-156 555.1 414 72.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.0e-155 553.9 413 71.4
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.4e-155 553.5 412 70.9
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 5.2e-155 551.6 407 72.0
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.2e-155 551.6 418 71.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 6.8e-155 551.2 366 76.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.2e-154 550.4 407 72.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.2e-154 550.4 403 72.5
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.6e-154 549.3 418 71.1
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 9.8e-154 547.4 411 69.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 2.9e-153 545.8 414 69.8
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.9e-153 545.0 400 71.2
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.4e-152 543.5 413 70.0
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.2e-152 542.3 408 70.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 4.1e-152 542.0 412 68.9
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.6e-151 540.0 398 70.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 6.0e-151 538.1 400 70.8
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 8.6e-150 534.3 414 69.3
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.9e-149 533.1 356 76.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.5e-149 530.8 412 68.4
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 3.6e-148 528.9 487 61.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.6e-148 528.9 332 80.7
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 4.7e-148 528.5 411 68.6
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 4.7e-148 528.5 374 73.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 8.1e-148 527.7 419 66.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-147 526.9 416 68.3
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.8e-147 526.6 408 68.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.8e-147 526.6 411 68.1
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.3e-147 526.2 411 68.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.3e-147 526.2 405 68.6
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.5e-146 523.5 403 68.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-146 523.5 418 67.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 3.4e-146 522.3 410 67.3
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 4.4e-146 521.9 331 79.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 7.5e-146 521.2 368 73.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.8e-146 520.8 379 69.9
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-145 518.5 379 70.2
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 6.4e-145 518.1 364 70.1
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 6.4e-145 518.1 369 71.8
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.1e-144 517.3 415 66.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.9e-144 516.5 352 74.1
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-144 516.5 412 66.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.2e-144 515.8 397 67.5
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.7e-143 512.7 384 69.0
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.7e-143 512.7 384 69.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.7e-143 512.7 415 65.8
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 3.5e-143 512.3 357 72.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.0e-142 510.8 357 72.3
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-142 510.4 351 73.5
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.3e-142 510.4 405 67.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.7e-142 510.0 417 65.5
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.7e-142 510.0 406 66.7
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-142 510.0 415 65.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.3e-142 509.6 408 65.2
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.0e-142 509.2 351 72.6
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.9e-142 508.8 402 66.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.1e-142 508.4 360 69.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 6.6e-142 508.1 401 66.1
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.6e-142 508.1 401 66.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 8.6e-142 507.7 414 63.5
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.6e-142 507.7 415 65.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 8.6e-142 507.7 361 71.5
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-141 506.5 401 65.8
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.9e-141 506.5 402 67.4
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-141 506.1 401 66.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.5e-141 506.1 358 71.8
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.3e-141 505.4 409 64.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 5.6e-141 505.0 402 65.2
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 7.3e-141 504.6 404 66.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.6e-140 503.4 409 63.6
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.6e-140 502.3 407 64.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.7e-140 501.9 407 64.6
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.7e-140 501.9 409 63.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.4e-139 500.4 411 65.0
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-139 500.0 409 63.8
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.3e-139 499.6 406 64.0
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.3e-139 499.6 405 65.2
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.5e-138 496.9 407 63.6
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.0e-138 496.5 427 63.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 2.6e-138 496.1 427 63.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 7.6e-138 494.6 407 64.1
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.7e-137 493.4 420 61.2
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 2.2e-137 493.0 408 64.0
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 3.2e-136 489.2 410 63.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 9.2e-136 487.6 357 70.6
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.3e-134 483.8 409 62.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.7e-134 483.4 410 63.4
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 3.0e-134 482.6 352 70.2
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 3.0e-134 482.6 411 65.0
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.1e-133 480.7 358 67.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.6e-132 476.9 331 74.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.5e-130 470.3 332 71.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 3.4e-130 469.2 335 71.0
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.2e-127 460.7 403 61.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.1e-123 446.0 349 66.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.4e-122 442.6 304 73.0
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.3e-121 440.7 312 72.8
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-117 427.2 291 75.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 6.2e-116 421.8 376 60.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.5e-114 415.6 358 60.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.5e-111 406.0 391 55.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.8e-110 403.7 332 61.7
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 5.3e-107 392.1 423 56.0
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.6e-106 389.8 354 56.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-105 386.7 346 56.9
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 4.9e-105 385.6 416 55.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-102 377.5 325 57.8
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.4e-99 366.7 344 53.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.2e-96 356.3 422 52.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 5.1e-94 349.0 312 53.2
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.3e-92 342.0 288 66.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.4e-85 319.3 279 60.9
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 5.7e-77 292.4 333 51.4
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.1e-72 278.1 392 39.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.5e-72 275.8 314 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.5e-69 265.4 307 44.3
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-67 261.5 273 56.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 2.4e-67 260.4 257 56.8
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.0e-67 258.8 344 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.2e-64 250.0 292 43.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.1e-63 245.7 225 59.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-63 245.7 285 42.8
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-62 243.0 289 40.5
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-61 241.5 290 43.4
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.6e-61 240.4 300 42.0
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-60 237.3 285 41.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 4.8e-60 236.1 149 82.6
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.4e-59 234.6 181 64.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-57 226.5 290 40.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 7.2e-56 222.2 201 59.2
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-54 218.4 296 39.5
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.5e-50 203.0 153 60.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-48 198.0 317 36.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-45 188.3 311 36.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-45 188.3 338 35.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-45 188.3 383 32.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-45 187.2 187 59.4
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.9e-44 183.7 162 59.3
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-42 177.6 328 32.0
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.6e-42 176.4 139 64.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.6e-41 172.6 320 32.5
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.3e-40 170.2 218 43.1
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-36 158.3 320 28.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.0e-33 146.4 303 33.0
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.5e-32 142.1 338 29.0
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 2.6e-29 134.0 119 55.5
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-29 133.3 309 28.2
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 6.4e-28 129.4 77 83.1
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.1e-27 125.9 125 59.2
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-26 124.4 327 28.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-26 123.2 221 30.8
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-25 121.3 289 30.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-25 120.9 101 52.5
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.6e-25 119.4 100 61.0
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-23 115.2 194 34.5
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-23 114.4 313 27.2
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.9e-22 109.0 317 27.8
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-21 108.6 320 28.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.4e-19 100.9 309 28.2
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.3e-17 94.4 298 26.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-16 92.0 356 25.6
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.4e-12 76.3 60 66.7
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-08 63.9 90 40.0
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-07 61.2 146 29.5


User provided reference genes

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