Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.1e-81 305.8 178 100.0
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.4e-69 264.6 251 68.9
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.2e-63 246.9 251 62.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.0e-63 246.1 251 61.8
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.3e-62 243.4 253 64.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.1e-58 230.3 237 59.5
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-53 213.4 251 53.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.4e-53 213.4 252 53.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.1e-50 203.8 222 58.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.8e-49 199.1 224 54.0
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.7e-46 189.9 232 50.9
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.4e-45 186.8 227 48.5
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.1e-45 184.5 229 48.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.6e-44 183.3 232 48.3
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.0e-44 181.4 226 47.8
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.0e-44 181.4 221 48.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.0e-44 181.4 221 48.9
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 7.9e-44 181.0 221 48.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.0e-43 180.6 222 49.1
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.3e-43 180.3 222 48.6
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.1e-43 178.3 223 48.4
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.1e-43 178.3 223 48.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 5.1e-43 178.3 226 47.3
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 8.7e-43 177.6 232 49.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.7e-43 177.6 222 48.2
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 8.7e-43 177.6 247 48.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.5e-42 176.0 229 47.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.5e-42 176.0 225 45.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.5e-42 176.0 223 45.3
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.5e-42 176.0 225 46.7
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.3e-42 175.6 220 45.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.3e-42 175.6 220 48.6
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 3.3e-42 175.6 221 47.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 9.6e-42 174.1 105 81.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 9.6e-42 174.1 218 45.0
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.3e-41 173.7 227 46.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-41 172.9 227 46.7
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-41 172.9 218 44.5
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.7e-41 172.2 228 46.5
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.8e-41 171.8 221 47.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 6.2e-41 171.4 226 45.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-40 170.6 220 44.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.8e-40 169.9 222 46.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.1e-40 169.1 225 44.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 3.1e-40 169.1 104 81.7
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 4.0e-40 168.7 221 46.6
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 5.3e-40 168.3 220 47.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 6.9e-40 167.9 221 46.2
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 6.9e-40 167.9 221 44.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.9e-40 167.9 220 48.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 6.9e-40 167.9 257 42.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 6.9e-40 167.9 222 45.5
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 9.0e-40 167.5 224 45.1
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-39 166.0 222 44.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.6e-39 166.0 222 44.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 3.4e-39 165.6 222 44.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.2e-38 162.9 219 44.3
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.9e-38 162.5 222 42.3
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.9e-38 162.5 222 43.2
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.8e-38 162.2 102 79.4
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 6.5e-38 161.4 236 43.2
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.1e-37 160.6 219 43.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.9e-37 159.8 228 42.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.5e-37 159.5 105 72.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.5e-37 159.5 233 43.3
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.2e-37 159.1 232 42.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.5e-37 158.3 105 68.6
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 5.5e-37 158.3 219 43.4
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 9.3e-37 157.5 105 75.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.6e-36 156.8 214 42.5
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.1e-36 156.4 214 43.9
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.7e-36 156.0 210 45.2
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.7e-36 156.0 220 41.4
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.5e-36 155.6 105 68.6
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.6e-36 155.2 105 72.4
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.6e-36 155.2 232 40.1
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.9e-36 154.5 105 67.6
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.3e-35 153.7 219 43.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-35 153.7 232 44.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.3e-35 153.7 105 73.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.8e-35 153.3 221 42.5
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.0e-35 152.5 220 42.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.9e-35 152.1 104 70.2
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 3.9e-35 152.1 220 40.9
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.7e-35 151.4 105 70.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 8.7e-35 151.0 105 69.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.1e-34 150.6 105 68.6
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-34 150.2 105 69.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.9e-34 149.8 104 69.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.5e-34 149.4 176 47.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 7.4e-34 147.9 104 70.2
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.4e-34 147.9 218 43.1
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 7.4e-34 147.9 104 68.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.2e-33 146.4 104 68.3
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.2e-33 146.4 217 41.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.2e-33 146.4 103 71.8
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.8e-33 146.0 105 71.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 3.7e-33 145.6 221 42.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.3e-33 144.8 217 41.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.3e-33 144.8 223 40.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 6.3e-33 144.8 222 38.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.1e-32 142.5 159 51.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 5.3e-32 141.7 226 39.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.3e-32 141.7 221 41.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 5.3e-32 141.7 216 41.7
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 6.9e-32 141.4 215 41.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 9.0e-32 141.0 220 41.4
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.2e-31 140.6 103 69.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.6e-31 139.4 198 41.9
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.5e-31 138.7 221 41.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.5e-31 138.7 226 38.9
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.9e-31 138.3 217 41.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.9e-31 138.3 220 41.4
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.7e-30 136.7 102 66.7
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 8.5e-30 134.4 220 40.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-29 134.0 223 38.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-29 134.0 223 39.5
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.4e-29 133.7 103 66.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.5e-29 132.9 101 68.3
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 4.2e-29 132.1 104 66.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.6e-28 130.2 105 58.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.0e-27 127.5 101 64.4
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.3e-27 126.3 103 58.3
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.9e-27 125.6 225 39.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 5.1e-27 125.2 162 46.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.1e-26 124.0 97 64.9
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.3e-26 122.5 218 38.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 3.7e-25 119.0 196 42.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.0e-23 113.2 215 37.7
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.5e-21 106.3 102 56.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.6e-20 103.6 102 53.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.7e-20 102.1 168 42.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.0e-19 99.4 224 31.7
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.5e-18 97.1 230 32.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.5e-18 97.1 94 50.0
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.3e-17 94.0 172 38.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.7e-17 93.6 58 70.7
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 2.8e-17 92.8 172 37.8
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 8.2e-17 91.3 154 40.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 8.2e-17 91.3 154 40.3
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.4e-16 90.5 91 56.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 6.9e-16 88.2 89 50.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.5e-15 87.0 51 88.2
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-15 86.7 79 59.5
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.9e-15 85.1 89 44.9
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.7e-14 83.6 53 75.5
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-14 83.2 181 35.4
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-14 83.2 53 75.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-14 83.2 53 75.5
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.2e-14 83.2 102 41.2
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.9e-14 82.8 50 72.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.1e-13 80.9 52 73.1
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.1e-13 80.9 218 30.7
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.2e-13 79.0 57 70.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 9.4e-13 77.8 53 67.9
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 4.7e-12 75.5 140 37.9
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.7e-12 75.5 51 72.5
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.0e-11 74.3 141 38.3
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.4e-11 73.9 62 56.5
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.4e-11 73.9 62 56.5
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-10 69.7 52 69.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 9.7e-10 67.8 78 50.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.1e-08 62.8 224 28.1
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.5e-07 59.3 62 58.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-06 57.4 74 60.8
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.7e-06 57.0 51 62.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 5.0e-06 55.5 34 73.5


User provided reference genes

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