Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001699g0040 Nicotiana tabacum HOM05D002548 ORTHO05D015821 5.9e-43 177.2 93 100.0
Nitab4.5_0003312g0090 Nicotiana tabacum HOM05D002548 ORTHO05D015821 5.2e-31 137.5 91 81.3
Nitab4.5_0011763g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 8.3e-29 130.2 83 83.1
Nitab4.5_0009460g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 8.9e-23 110.2 71 81.7
Nitab4.5_0002612g0100 Nicotiana tabacum HOM05D002548 ORTHO05D003031 2.0e-22 109.0 65 89.2
Solyc01g100020.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 6.4e-21 104.0 65 83.1
Peaxi162Scf00037g01718 Petunia axillaris HOM05D002548 ORTHO05D003031 1.1e-20 103.2 65 80.0
CAN.G1273.30 Capsicum annuum HOM05D002548 ORTHO05D015821 1.9e-20 102.4 65 81.5
Sopen01g043540 Solanum pennellii HOM05D002548 ORTHO05D003031 2.4e-20 102.1 64 82.8
Nitab4.5_0008552g0050 Nicotiana tabacum HOM05D002548 ORTHO05D015821 7.3e-17 90.5 57 80.7
Oeu043326.3 Olea europaea HOM05D002548 ORTHO05D003031 3.4e-14 81.6 67 64.2
MSTRG.27968 Avicennia marina HOM05D002548 ORTHO05D003031 7.1e-12 73.9 67 61.2
SalBow3G2202 Salvia bowleyana HOM05D002548 ORTHO05D003031 1.6e-11 72.8 68 57.4
ATR0693G075 Amborella trichopoda HOM05D002548 ORTHO05D015821 2.1e-11 72.4 53 69.8
CDE05G0041 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 3.5e-11 71.6 54 68.5
ClCG02G015220 Citrullus lanatus HOM05D002548 ORTHO05D003031 6.0e-11 70.9 72 54.2
CiPaw.07G025000 Carya illinoinensis HOM05D002548 ORTHO05D003031 1.0e-10 70.1 69 56.5
CDE11G0396 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 1.0e-10 70.1 54 66.7
Cc02_g34510 Coffea canephora HOM05D002548 ORTHO05D003031 3.9e-10 68.2 68 60.3
Dinv24404 Davidia involucrata HOM05D002548 ORTHO05D003031 5.1e-10 67.8 40 82.5
CANSAT54G2362 Cannabis sativa HOM05D002548 ORTHO05D003031 6.6e-10 67.4 66 57.6
Nn3g21569 Nelumbo nucifera HOM05D002548 ORTHO05D003031 6.6e-10 67.4 53 66.0
MBI18_g25081_MAGBIO Magnolia biondii HOM05D002548 ORTHO05D003031 1.1e-09 66.6 55 61.8
PGR004G1545 Punica granatum HOM05D002548 ORTHO05D003031 1.1e-09 66.6 53 67.9
SGA_v2.0_scaffold81G26109 Striga asiatica HOM05D002548 ORTHO05D003031 1.1e-09 66.6 67 53.7
TAR633G0318 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.5e-09 66.2 53 64.2
unitig_0.g2321 Utricularia gibba HOM05D002548 ORTHO05D003031 2.5e-09 65.5 69 55.1
ClCG06G004910 Citrullus lanatus HOM05D002548 ORTHO05D003031 4.3e-09 64.7 56 60.7
MELO3C004211.2 Cucumis melo HOM05D002548 ORTHO05D003031 4.3e-09 64.7 72 50.0
Dinv29713 Davidia involucrata HOM05D002548 ORTHO05D003031 4.3e-09 64.7 50 64.0
CSS0001894 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 5.6e-09 64.3 56 58.9
CSS0029965 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 5.6e-09 64.3 56 58.9
Ca_01908_v3 Cicer arietinum L. HOM05D002548 ORTHO05D003031 5.6e-09 64.3 58 55.2
Ciclev10004210m.g Citrus clementina HOM05D002548 ORTHO05D003031 7.3e-09 63.9 40 75.0
CsaV3_2G006790 Cucumis sativus L. HOM05D002548 ORTHO05D003031 7.3e-09 63.9 58 56.9
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 7.3e-09 63.9 65 52.3
QL03p019133 Quercus lobata HOM05D002548 ORTHO05D003031 7.3e-09 63.9 68 52.9
Haze_01147 Corylus avellana HOM05D002548 ORTHO05D003031 9.6e-09 63.5 57 59.6
FvH4_4g18810 Fragaria vesca HOM05D002548 ORTHO05D003031 9.6e-09 63.5 67 56.7
FAN17G0016 Fragaria x ananassa HOM05D002548 ORTHO05D003031 9.6e-09 63.5 67 56.7
MD13G1162600 Malus domestica HOM05D002548 ORTHO05D003031 9.6e-09 63.5 40 75.0
MD16G1162400 Malus domestica HOM05D002548 ORTHO05D003031 9.6e-09 63.5 40 75.0
Phvul.007G198600 Phaseolus vulgaris HOM05D002548 ORTHO05D003031 9.6e-09 63.5 65 52.3
MELO3C021299.2 Cucumis melo HOM05D002548 ORTHO05D003031 1.3e-08 63.2 56 60.7
Prupe.6G317900 Prunus persica HOM05D002548 ORTHO05D003031 1.3e-08 63.2 66 59.1
RcHm_v2.0_Chr4g0423621 Rosa chinensis HOM05D002548 ORTHO05D003031 1.6e-08 62.8 65 53.8
Sc01g0005280 Simmondsia chinensis HOM05D002548 ORTHO05D003031 1.6e-08 62.8 46 71.7
Duzib177G0244 Durio zibethinus HOM05D002548 ORTHO05D003031 2.1e-08 62.4 70 47.1
Prupe.1G130000 Prunus persica HOM05D002548 ORTHO05D003031 2.1e-08 62.4 65 52.3
Sed0007898 Sechium edule HOM05D002548 ORTHO05D003031 2.1e-08 62.4 56 58.9
HPP92_001312 Vanilla planifolia HOM05D002548 ORTHO05D003031 2.1e-08 62.4 57 54.4
FvH4_6g06940 Fragaria vesca HOM05D002548 ORTHO05D003031 2.8e-08 62.0 65 56.9
Nn4g25730 Nelumbo nucifera HOM05D002548 ORTHO05D003031 2.8e-08 62.0 53 60.4
Solyc01g065720.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 2.8e-08 62.0 55 61.8
Lj9C201T6 Lonicera japonica HOM05D002548 ORTHO05D015821 3.6e-08 61.6 58 56.9
Cfa015437 Carpinus fangiana HOM05D002548 ORTHO05D003031 4.8e-08 61.2 41 73.2
Sabra13G0010900 Salix brachista HOM05D002548 ORTHO05D003031 4.8e-08 61.2 54 59.3
Sed0006408 Sechium edule HOM05D002548 ORTHO05D003031 4.8e-08 61.2 66 51.5
Sc19g0005510 Simmondsia chinensis HOM05D002548 ORTHO05D003031 4.8e-08 61.2 78 52.6
Ciclev10000089m.g Citrus clementina HOM05D002548 ORTHO05D003031 6.2e-08 60.8 41 70.7
Lj6g0012924 Lotus japonicus HOM05D002548 ORTHO05D003031 6.2e-08 60.8 41 70.7
SHI12819 Sapria himalayana HOM05D002548 ORTHO05D003031 6.2e-08 60.8 38 73.7
Sed0021308 Sechium edule HOM05D002548 ORTHO05D003031 6.2e-08 60.8 67 53.7
Oeu031987.1 Olea europaea HOM05D002548 ORTHO05D003031 8.1e-08 60.5 77 48.1
Os05g0358700 Oryza sativa ssp. japonica HOM05D002548 ORTHO05D003031 8.1e-08 60.5 41 70.7
RcHm_v2.0_Chr3g0456481 Rosa chinensis HOM05D002548 ORTHO05D003031 8.1e-08 60.5 65 55.4
Thecc.05G317000 Theobroma cacao HOM05D002548 ORTHO05D003031 8.1e-08 60.5 75 48.0
GSVIVG01035095001 Vitis vinifera HOM05D002548 ORTHO05D003031 8.1e-08 60.5 53 60.4
DCAR_014258 Daucus carota HOM05D002548 ORTHO05D003031 1.1e-07 60.1 66 47.0
Dinv44341 Davidia involucrata HOM05D002548 ORTHO05D003031 1.1e-07 60.1 53 58.5
Lsat_1_v5_gn_3_21860 Lactuca sativa HOM05D002548 ORTHO05D003031 1.1e-07 60.1 53 56.6
Lalb_Chr13g0298201 Lupinus albus HOM05D002548 ORTHO05D003031 1.1e-07 60.1 40 70.0
Manes.15G009600 Manihot esculenta HOM05D002548 ORTHO05D003031 1.1e-07 60.1 55 60.0
Medtr2g435560 Medicago truncatula HOM05D002548 ORTHO05D003031 1.1e-07 60.1 55 60.0
Potri.013G012300 Populus trichocarpa HOM05D002548 ORTHO05D003031 1.1e-07 60.1 54 57.4
Hund20533 Selenicereus undatus HOM05D002548 ORTHO05D003031 1.1e-07 60.1 38 76.3
TWI73G1219 Tripterygium wilfordii HOM05D002548 ORTHO05D003031 1.1e-07 60.1 61 55.7
CANSAT78G1895 Cannabis sativa HOM05D002548 ORTHO05D003031 1.4e-07 59.7 72 48.6
AUR62018063 Chenopodium quinoa HOM05D002548 ORTHO05D003031 1.4e-07 59.7 61 57.4
Cc03_g01430 Coffea canephora HOM05D002548 ORTHO05D003031 1.4e-07 59.7 41 70.7
Glyma.09G041400 Glycine max HOM05D002548 ORTHO05D003031 1.4e-07 59.7 52 63.5
Medtr1g083620 Medicago truncatula HOM05D002548 ORTHO05D003031 1.4e-07 59.7 65 50.8
Potri.008G211100 Populus trichocarpa HOM05D002548 ORTHO05D003031 1.8e-07 59.3 56 58.9
THA.LOC104818736 Tarenaya hassleriana HOM05D002548 ORTHO05D003031 1.8e-07 59.3 35 77.1
VMungo1309G2358 Vigna mungo HOM05D002548 ORTHO05D003031 1.8e-07 59.3 57 57.9
A05p32840 Brassica napus HOM05D002548 ORTHO05D003031 2.4e-07 58.9 35 80.0
C05p49550 Brassica napus HOM05D002548 ORTHO05D003031 2.4e-07 58.9 35 80.0
BolC5t33709H Brassica oleracea HOM05D002548 ORTHO05D003031 2.4e-07 58.9 35 80.0
Glyma.15G152100 Glycine max HOM05D002548 ORTHO05D003031 2.4e-07 58.9 41 70.7
Gohir.D11G280550 Gossypium hirsutum HOM05D002548 ORTHO05D003031 2.4e-07 58.9 40 70.0
Gorai.007G302800 Gossypium raimondii HOM05D002548 ORTHO05D003031 2.4e-07 58.9 40 70.0
Ah.04g153690 Amaranthus hybridus HOM05D002548 ORTHO05D003031 3.1e-07 58.5 40 70.0
Cpa.g.sc50.149 Carica papaya HOM05D002548 ORTHO05D003031 3.1e-07 58.5 40 70.0
DCAR_002487 Daucus carota HOM05D002548 ORTHO05D003031 3.1e-07 58.5 55 61.8
Gohir.A10G167300 Gossypium hirsutum HOM05D002548 ORTHO05D003031 3.1e-07 58.5 41 68.3
Gohir.D10G173400 Gossypium hirsutum HOM05D002548 ORTHO05D003031 3.1e-07 58.5 41 68.3
Gorai.011G193900 Gossypium raimondii HOM05D002548 ORTHO05D003031 3.1e-07 58.5 41 68.3
Hma1.2p1_1352F.1_g277520 Hydrangea macrophylla HOM05D002548 ORTHO05D003031 3.1e-07 58.5 53 56.6
Sp3g15040 Schrenkiella parvula HOM05D002548 ORTHO05D003031 3.1e-07 58.5 35 80.0
Thecc.04G290500 Theobroma cacao HOM05D002548 ORTHO05D003031 3.1e-07 58.5 55 58.2
Aa31LG8G3860 Aethionema arabicum HOM05D002548 ORTHO05D003031 4.0e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.Y1617F Arachis hypogaea HOM05D002548 ORTHO05D003031 4.0e-07 58.2 66 51.5
COL.COLO4_13805 Corchorus olitorius HOM05D002548 ORTHO05D015821 4.0e-07 58.2 55 58.2
Lj3A826G71 Lonicera japonica HOM05D002548 ORTHO05D003031 4.0e-07 58.2 53 56.6
Lj6A682T77 Lonicera japonica HOM05D002548 ORTHO05D003031 4.0e-07 58.2 53 58.5
Lalb_Chr18g0059101 Lupinus albus HOM05D002548 ORTHO05D003031 4.0e-07 58.2 40 70.0
Os01g0310100 Oryza sativa ssp. japonica HOM05D002548 ORTHO05D015821 4.0e-07 58.2 40 67.5
Zm00001eb285800 Zea mays HOM05D002548 ORTHO05D003031 4.0e-07 58.2 40 67.5
Peaxi162Scf00065g01031 Petunia axillaris HOM05D002548 ORTHO05D003031 5.3e-07 57.8 53 58.5
Phvul.009G251700 Phaseolus vulgaris HOM05D002548 ORTHO05D003031 5.3e-07 57.8 41 68.3
Potri.010G006300 Populus trichocarpa HOM05D002548 ORTHO05D003031 5.3e-07 57.8 56 57.1
Sabra10G0005400 Salix brachista HOM05D002548 ORTHO05D003031 5.3e-07 57.8 56 57.1
Hund24880 Selenicereus undatus HOM05D002548 ORTHO05D003031 5.3e-07 57.8 77 49.4
Ah.04g161290 Amaranthus hybridus HOM05D002548 ORTHO05D015821 6.9e-07 57.4 35 77.1
AL3G29710 Arabidopsis lyrata HOM05D002548 ORTHO05D003031 6.9e-07 57.4 35 77.1
AT3G16785 Arabidopsis thaliana HOM05D002548 ORTHO05D003031 6.9e-07 57.4 35 77.1
EL10Ac3g06654 Beta vulgaris HOM05D002548 ORTHO05D003031 6.9e-07 57.4 67 49.3
Carub.0003s1650 Capsella rubella HOM05D002548 ORTHO05D003031 6.9e-07 57.4 35 77.1
Thhalv10019948m.g Eutrema salsugineum HOM05D002548 ORTHO05D003031 6.9e-07 57.4 35 77.1
Psat6g151640 Pisum sativum HOM05D002548 ORTHO05D003031 6.9e-07 57.4 65 50.8
Atru.chr4.2918 Acer truncatum HOM05D002548 ORTHO05D003031 9.0e-07 57.0 54 57.4
arahy.Tifrunner.gnm1.ann1.I1DXP3 Arachis hypogaea HOM05D002548 ORTHO05D003031 9.0e-07 57.0 58 55.2
BcaB06g25774 Brassica carinata HOM05D002548 ORTHO05D003031 9.0e-07 57.0 34 79.4
AUR62015262 Chenopodium quinoa HOM05D002548 ORTHO05D003031 9.0e-07 57.0 60 56.7
DCAR_030494 Daucus carota HOM05D002548 ORTHO05D003031 9.0e-07 57.0 41 65.9
ECA240G1331 Erigeron canadensis HOM05D002548 ORTHO05D003031 9.0e-07 57.0 41 70.7
FAN07G0348 Fragaria x ananassa HOM05D002548 ORTHO05D003031 9.0e-07 57.0 63 55.6
HanXRQChr03g0083791 Helianthus annuus HOM05D002548 ORTHO05D003031 9.0e-07 57.0 40 67.5
vmacro08104 Vaccinium macrocarpon HOM05D002548 ORTHO05D003031 9.0e-07 57.0 38 73.7
EL10Ac4g09878 Beta vulgaris HOM05D002548 ORTHO05D003031 1.2e-06 56.6 35 74.3
CSS0031783 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 1.2e-06 56.6 40 65.0
CSS0035512 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 1.2e-06 56.6 40 65.0
CSS0042391 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 1.2e-06 56.6 40 65.0
Manes.08G114700 Manihot esculenta HOM05D002548 ORTHO05D003031 1.2e-06 56.6 65 49.2
PSO832G1027 Papaver somniferum HOM05D002548 ORTHO05D003031 1.2e-06 56.6 35 71.4
Atru.chr2.112 Acer truncatum HOM05D002548 ORTHO05D003031 1.5e-06 56.2 54 55.6
Duzib151G1026 Durio zibethinus HOM05D002548 ORTHO05D003031 1.5e-06 56.2 40 65.0
Gorai.002G028800 Gossypium raimondii HOM05D002548 ORTHO05D003031 1.5e-06 56.2 40 65.0
Lsat_1_v5_gn_6_76021 Lactuca sativa HOM05D002548 ORTHO05D003031 1.5e-06 56.2 40 67.5
Psat1g156040 Pisum sativum HOM05D002548 ORTHO05D003031 1.5e-06 56.2 57 54.4
THA.LOC104821784 Tarenaya hassleriana HOM05D002548 ORTHO05D003031 1.5e-06 56.2 40 67.5
unitig_88.g27792 Utricularia gibba HOM05D002548 ORTHO05D003031 1.5e-06 56.2 54 55.6
CiPaw.02G079100 Carya illinoinensis HOM05D002548 ORTHO05D003031 2.0e-06 55.8 54 55.6
HanXRQChr10g0293451 Helianthus annuus HOM05D002548 ORTHO05D003031 2.0e-06 55.8 68 47.1
TPR.G22308 Trifolium pratense HOM05D002548 ORTHO05D003031 2.0e-06 55.8 56 57.1
Actinidia18634 Actinidia chinensis HOM05D002548 ORTHO05D003031 2.6e-06 55.5 40 65.0
Gohir.D02G056200 Gossypium hirsutum HOM05D002548 ORTHO05D003031 2.6e-06 55.5 39 66.7
Gorai.005G062100 Gossypium raimondii HOM05D002548 ORTHO05D003031 2.6e-06 55.5 39 66.7
Lj5g0015075 Lotus japonicus HOM05D002548 ORTHO05D003031 2.6e-06 55.5 65 52.3
PSO407G0187 Papaver somniferum HOM05D002548 ORTHO05D003031 2.6e-06 55.5 35 68.6
Rhsim04G0227700 Rhododendron simsii HOM05D002548 ORTHO05D003031 2.6e-06 55.5 35 74.3
SalBow5G4835 Salvia bowleyana HOM05D002548 ORTHO05D003031 2.6e-06 55.5 55 58.2
TAR636G0483 Trochodendron aralioides HOM05D001493 ORTHO05D001681 2.6e-06 55.5 51 56.9
BraA01t04485Z Brassica rapa HOM05D002548 ORTHO05D003031 3.4e-06 55.1 72 48.6
Migut.N00069 Erythranthe guttata HOM05D002548 ORTHO05D003031 3.4e-06 55.1 54 57.4
PSO170G0357 Papaver somniferum HOM05D002548 ORTHO05D003031 3.4e-06 55.1 55 49.1
Zm00001eb339870 Zea mays HOM05D002548 ORTHO05D003031 3.4e-06 55.1 40 65.0
AL3G16280 Arabidopsis lyrata HOM05D002548 ORTHO05D003031 4.4e-06 54.7 35 68.6
AT3G05630 Arabidopsis thaliana HOM05D002548 ORTHO05D003031 4.4e-06 54.7 35 68.6
MSTRG.21784 Avicennia marina HOM05D002548 ORTHO05D003031 4.4e-06 54.7 69 47.8
Cpa.g.sc48.121 Carica papaya HOM05D002548 ORTHO05D003031 4.4e-06 54.7 71 43.7
HanXRQChr13g0413971 Helianthus annuus HOM05D002548 ORTHO05D003031 4.4e-06 54.7 41 68.3
MD04G1197500 Malus domestica HOM05D002548 ORTHO05D003031 4.4e-06 54.7 66 53.0
Sp3g04520 Schrenkiella parvula HOM05D002548 ORTHO05D003031 4.4e-06 54.7 35 68.6
ECA246G2933 Erigeron canadensis HOM05D002548 ORTHO05D003031 5.8e-06 54.3 55 52.7
Lalb_Chr21g0310471 Lupinus albus HOM05D002548 ORTHO05D003031 5.8e-06 54.3 65 50.8
QL06p010842 Quercus lobata HOM05D002548 ORTHO05D003031 5.8e-06 54.3 41 61.0
BolC1t05681H Brassica oleracea HOM05D002548 ORTHO05D003031 7.6e-06 53.9 72 48.6
Cfa006662 Carpinus fangiana HOM05D002548 ORTHO05D003031 7.6e-06 53.9 69 49.3
Rhsim05G0136200 Rhododendron simsii HOM05D002548 ORTHO05D003031 7.6e-06 53.9 62 48.4
TPR.G17701 Trifolium pratense HOM05D002548 ORTHO05D003031 7.6e-06 53.9 65 47.7
Actinidia40304 Actinidia chinensis HOM05D002548 ORTHO05D003031 9.9e-06 53.5 35 68.6
arahy.Tifrunner.gnm1.ann1.M1WUGI Arachis hypogaea HOM05D002548 ORTHO05D003031 9.9e-06 53.5 40 62.5


User provided reference genes

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