Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.9e-215 752.3 396 100.0
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 9.0e-157 557.4 361 77.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 6.4e-155 551.2 361 76.5
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.6e-153 546.6 361 75.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 2.1e-153 546.2 361 75.3
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 3.5e-153 545.4 297 92.6
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 3.5e-153 545.4 361 74.5
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 4.6e-153 545.0 362 75.1
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.0e-152 543.9 361 75.1
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.0e-152 543.9 362 76.5
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.0e-152 542.3 361 73.4
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.0e-152 542.3 362 76.2
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 3.9e-152 542.0 363 74.7
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.9e-152 542.0 361 74.5
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.1e-152 541.6 361 74.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.1e-152 541.6 361 73.7
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.1e-152 541.6 361 73.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 5.1e-152 541.6 363 75.2
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 6.7e-152 541.2 362 76.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 8.7e-152 540.8 373 72.4
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 8.7e-152 540.8 361 75.3
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.5e-151 540.0 362 75.1
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.5e-151 540.0 362 74.6
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.9e-151 539.7 363 74.7
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.9e-151 539.7 361 74.8
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.6e-151 538.1 361 72.3
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 7.4e-151 537.7 375 71.5
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.6e-151 537.3 375 71.5
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 9.6e-151 537.3 361 74.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.6e-151 537.3 363 73.3
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.3e-150 537.0 361 74.5
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.6e-150 536.6 375 71.2
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.6e-150 536.6 361 73.7
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.1e-150 536.2 361 73.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.8e-150 535.8 356 74.2
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.7e-150 535.4 361 73.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 3.7e-150 535.4 361 72.9
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 4.8e-150 535.0 363 73.3
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.2e-150 534.6 361 74.2
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.2e-150 534.6 361 74.2
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 8.2e-150 534.3 361 73.4
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.4e-149 533.5 327 80.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.4e-149 533.5 360 73.3
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.8e-149 533.1 362 74.0
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.8e-149 533.1 361 74.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.1e-149 532.3 361 74.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-149 532.3 361 74.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 5.3e-149 531.6 361 73.7
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 6.9e-149 531.2 361 74.0
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.5e-148 530.0 361 72.6
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.0e-148 529.6 361 73.4
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.6e-148 529.3 325 85.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 3.4e-148 528.9 362 72.4
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.5e-148 528.5 361 72.9
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 7.6e-148 527.7 361 72.9
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 7.6e-148 527.7 361 72.9
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.0e-147 527.3 362 72.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.3e-147 526.9 362 72.9
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.3e-147 526.9 361 72.3
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.7e-147 526.6 361 72.3
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.2e-147 526.2 361 72.3
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 2.9e-147 525.8 361 71.7
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.9e-147 525.8 382 71.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 3.8e-147 525.4 327 78.6
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 6.5e-147 524.6 363 71.9
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 8.4e-147 524.2 359 72.7
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 8.4e-147 524.2 359 72.7
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 8.4e-147 524.2 361 72.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 8.4e-147 524.2 361 72.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.1e-146 523.9 361 72.0
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.4e-146 523.5 327 78.6
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.4e-146 523.5 327 78.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.9e-146 523.1 361 71.5
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.9e-146 523.1 361 72.0
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.9e-146 523.1 361 72.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 2.5e-146 522.7 327 78.6
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.5e-146 522.7 327 78.3
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.2e-145 520.4 324 79.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.6e-145 520.0 361 72.9
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.8e-144 516.5 362 71.5
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 8.7e-144 514.2 327 77.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 5.7e-143 511.5 361 70.6
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.6e-142 510.0 361 70.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.6e-142 510.0 361 70.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-142 509.6 361 70.6
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 6.3e-142 508.1 327 75.2
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 8.2e-142 507.7 328 76.2
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.4e-141 506.9 327 77.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.8e-141 506.5 327 75.2
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.4e-141 506.1 363 70.5
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.6e-140 502.7 326 74.5
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 8.5e-139 497.7 362 69.1
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 8.5e-139 497.7 327 74.3
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.9e-138 496.5 459 58.4
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.1e-137 493.0 365 69.0
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.6e-137 492.3 341 71.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.7e-136 488.0 361 69.8
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.1e-135 487.3 297 81.1
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 2.4e-133 479.6 316 75.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.9e-132 474.9 342 69.0
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.8e-131 472.2 281 81.5
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 6.5e-131 471.5 360 67.2
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 2.3e-128 463.0 361 65.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.3e-128 463.0 317 71.3
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 3.0e-128 462.6 436 58.5
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 8.8e-128 461.1 327 69.7
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.0e-127 459.9 327 69.4
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.7e-126 456.8 361 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 3.7e-126 455.7 327 68.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.9e-120 435.6 294 74.5
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.2e-118 429.9 327 64.5
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 4.1e-117 425.6 285 74.7
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.5e-111 404.8 361 61.5
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.4e-109 400.6 270 73.3
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 9.1e-109 397.9 279 72.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.2e-106 389.4 249 75.5
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 5.5e-106 388.7 286 68.2
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.8e-101 373.6 247 72.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 2.0e-87 327.0 206 78.6
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 8.6e-75 285.0 196 71.9
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 7.3e-74 282.0 195 71.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.9e-69 267.3 320 45.3
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 7.8e-68 261.9 322 43.8
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.2e-65 252.3 169 74.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-59 234.6 143 79.7
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.8e-55 219.2 132 77.3
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 3.5e-52 209.9 326 35.6
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 2.4e-48 197.2 360 40.3
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.9e-42 177.6 109 76.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.6e-41 174.5 365 34.5
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.6e-33 147.9 92 80.4
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 8.2e-33 145.6 109 67.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 3.3e-26 123.6 103 59.2
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 7.4e-26 122.5 79 78.5
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.2e-25 120.9 125 52.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.1e-24 117.1 106 58.5
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.5e-22 109.4 117 53.0
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.2e-20 105.1 68 75.0
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.4e-19 101.7 66 75.8
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 3.0e-19 100.5 64 78.1
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.7e-17 93.6 64 71.9
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.7e-17 93.6 64 71.9
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.7e-17 93.6 64 71.9
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.4e-16 91.7 67 64.2
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 5.3e-16 89.7 64 68.8
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 5.3e-16 89.7 64 68.8
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.0e-15 87.8 64 67.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.6e-15 87.4 92 52.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.5e-13 80.9 54 77.8
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 2.7e-12 77.4 43 86.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.1e-08 63.9 35 82.9
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 9.1e-08 62.4 67 50.7
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-06 58.5 69 47.8
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.9e-06 57.4 36 72.2
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 5.0e-06 56.6 47 61.7


User provided reference genes

Program Settings