Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001689g0090 Nicotiana tabacum HOM05D007385 ORTHO05D009349 3.2e-127 458.4 220 100.0
Nitab4.5_0000309g0300 Nicotiana tabacum HOM05D007385 ORTHO05D009349 4.2e-103 378.3 271 71.2
CAN.G681.4 Capsicum annuum HOM05D007385 ORTHO05D009349 3.0e-93 345.5 271 65.7
Sopen09g035860 Solanum pennellii HOM05D007385 ORTHO05D009349 1.6e-91 339.7 271 64.2
PGSC0003DMG400016606 Solanum tuberosum HOM05D007385 ORTHO05D009349 1.1e-90 337.0 271 64.2
Solyc09g097920.3 Solanum lycopersicum HOM05D007385 ORTHO05D009349 1.9e-87 326.2 271 62.4
Peaxi162Scf00251g00117 Petunia axillaris HOM05D007385 ORTHO05D009349 4.6e-86 321.6 271 61.6
Nitab4.5_0000309g0070 Nicotiana tabacum HOM05D007385 ORTHO05D009349 9.3e-71 270.8 238 62.2
Dinv22764 Davidia involucrata HOM05D007385 ORTHO05D009349 3.2e-63 245.7 264 47.0
FvH4_5g13630 Fragaria vesca HOM05D007385 ORTHO05D009349 3.0e-61 239.2 259 45.6
RcHm_v2.0_Chr7g0183331 Rosa chinensis HOM05D007385 ORTHO05D009349 1.5e-60 236.9 260 45.0
MSTRG.11333 Avicennia marina HOM05D007385 ORTHO05D009349 2.2e-59 233.0 251 45.8
FAN18G0626 Fragaria x ananassa HOM05D007385 ORTHO05D009349 6.3e-59 231.5 259 44.4
FAN13G1154 Fragaria x ananassa HOM05D007385 ORTHO05D009349 1.8e-58 229.9 259 44.8
SalBow5G4421 Salvia bowleyana HOM05D007385 ORTHO05D009349 5.3e-58 228.4 265 43.8
Lj5E134T0 Lonicera japonica HOM05D007385 ORTHO05D009349 9.1e-58 227.6 241 48.5
CSS0026709 Camellia sinensis var. sinensis HOM05D007385 ORTHO05D009349 1.2e-57 227.3 271 43.9
Ciclev10020129m.g Citrus clementina HOM05D007385 ORTHO05D009349 2.6e-57 226.1 253 45.1
Migut.L01399 Erythranthe guttata HOM05D007385 ORTHO05D009349 4.5e-57 225.3 251 44.6
CiPaw.11G055800 Carya illinoinensis HOM05D007385 ORTHO05D009349 1.3e-56 223.8 247 46.2
QL10p019987 Quercus lobata HOM05D007385 ORTHO05D009349 1.1e-55 220.7 269 42.0
MBI16_g10855_MAGBIO Magnolia biondii HOM05D007385 ORTHO05D009349 2.5e-55 219.5 251 44.6
Gohir.A10G242100 Gossypium hirsutum HOM05D007385 ORTHO05D009349 4.7e-54 215.3 269 40.5
Cfa019356 Carpinus fangiana HOM05D007385 ORTHO05D009349 6.1e-54 214.9 271 42.1
Potri.018G051600 Populus trichocarpa HOM05D007385 ORTHO05D009349 6.1e-54 214.9 266 42.5
Haze_07747 Corylus avellana HOM05D007385 ORTHO05D009349 1.0e-53 214.2 271 42.8
PGR083G1273 Punica granatum HOM05D007385 ORTHO05D009349 1.0e-53 214.2 258 43.0
Gohir.D10G254100 Gossypium hirsutum HOM05D007385 ORTHO05D009349 3.0e-53 212.6 269 40.1
FAN08G0404 Fragaria x ananassa HOM05D007385 ORTHO05D009349 6.7e-53 211.5 234 44.4
GSVIVG01008120001 Vitis vinifera HOM05D007385 ORTHO05D009349 6.7e-53 211.5 238 44.1
Rhsim02G0022600 Rhododendron simsii HOM05D007385 ORTHO05D009349 8.8e-53 211.1 252 44.0
Atru.chr9.516 Acer truncatum HOM05D007385 ORTHO05D009349 1.5e-52 210.3 253 43.1
Actinidia04811 Actinidia chinensis HOM05D007385 ORTHO05D009349 2.6e-52 209.5 239 46.0
AUR62039653 Chenopodium quinoa HOM05D007385 ORTHO05D009349 2.6e-52 209.5 247 42.9
Ah.01g002510 Amaranthus hybridus HOM05D007385 ORTHO05D009349 4.4e-52 208.8 245 41.6
Gorai.011G295100 Gossypium raimondii HOM05D007385 ORTHO05D009349 4.4e-52 208.8 269 39.4
TAR626G0510 Trochodendron aralioides HOM05D007385 ORTHO05D009349 4.4e-52 208.8 247 42.9
Cpa.g.sc94.76 Carica papaya HOM05D007385 ORTHO05D009349 7.4e-52 208.0 242 43.8
THA.LOC104812111 Tarenaya hassleriana HOM05D007385 ORTHO05D009349 2.2e-51 206.5 236 44.9
HanXRQChr08g0230411 Helianthus annuus HOM05D007385 ORTHO05D009349 3.7e-51 205.7 240 42.9
Hma1.2p1_0322F.1_g124600 Hydrangea macrophylla HOM05D007385 ORTHO05D009349 4.8e-51 205.3 248 40.7
Lsat_1_v5_gn_5_22940 Lactuca sativa HOM05D007385 ORTHO05D009349 4.8e-51 205.3 245 42.0
Lsat_1_v5_gn_5_22980 Lactuca sativa HOM05D007385 ORTHO05D009349 4.8e-51 205.3 245 42.0
Thecc.04G178800 Theobroma cacao HOM05D007385 ORTHO05D009349 4.8e-51 205.3 253 41.5
Prupe.5G207400 Prunus persica HOM05D007385 ORTHO05D009349 6.3e-51 204.9 237 42.6
SGA_v2.0_scaffold28G11738 Striga asiatica HOM05D007385 ORTHO05D009349 8.2e-51 204.5 238 41.2
SGA_v2.0_scaffold733G53530 Striga asiatica HOM05D007385 ORTHO05D009349 8.2e-51 204.5 238 41.2
MD14G1214100 Malus domestica HOM05D007385 ORTHO05D009349 1.4e-50 203.8 237 42.6
COL.COLO4_07677 Corchorus olitorius HOM05D007385 ORTHO05D009349 1.8e-50 203.4 267 39.7
CANSAT78G0918 Cannabis sativa HOM05D007385 ORTHO05D009349 2.4e-50 203.0 256 41.4
Sabra18G0048200 Salix brachista HOM05D007385 ORTHO05D009349 2.4e-50 203.0 257 40.9
Aa31LG4G4430 Aethionema arabicum HOM05D007385 ORTHO05D009349 3.1e-50 202.6 261 41.0
BcaC08g46845 Brassica carinata HOM05D007385 ORTHO05D009349 3.1e-50 202.6 247 40.9
C06p48270 Brassica napus HOM05D007385 ORTHO05D009349 4.1e-50 202.2 266 41.7
Duzib212G0687 Durio zibethinus HOM05D007385 ORTHO05D009349 4.1e-50 202.2 238 42.9
AT1G74120 Arabidopsis thaliana HOM05D007385 ORTHO05D009349 5.3e-50 201.8 261 41.8
Aqoxy3G03653 Aquilegia oxysepala HOM05D007385 ORTHO05D009349 7.0e-50 201.4 247 42.5
EL10Ac5g11161 Beta vulgaris HOM05D007385 ORTHO05D009349 7.0e-50 201.4 241 41.1
AUR62021530 Chenopodium quinoa HOM05D007385 ORTHO05D009349 7.0e-50 201.4 241 41.5
Manes.14G087500 Manihot esculenta HOM05D007385 ORTHO05D009349 7.0e-50 201.4 272 40.1
AL2G34030 Arabidopsis lyrata HOM05D007385 ORTHO05D009349 9.1e-50 201.1 265 41.1
COL.COLO4_37709 Corchorus olitorius HOM05D007385 ORTHO05D009349 1.2e-49 200.7 215 43.7
Lalb_Chr11g0068081 Lupinus albus HOM05D007385 ORTHO05D009349 1.2e-49 200.7 262 42.7
BcaC08g46812 Brassica carinata HOM05D007385 ORTHO05D009349 1.6e-49 200.3 262 42.0
BolC6t39859H Brassica oleracea HOM05D007385 ORTHO05D009349 1.6e-49 200.3 262 42.0
A07p40010 Brassica napus HOM05D007385 ORTHO05D009349 2.6e-49 199.5 266 40.6
BraA07t31546Z Brassica rapa HOM05D007385 ORTHO05D009349 2.6e-49 199.5 266 40.6
ClCG03G008530 Citrullus lanatus HOM05D007385 ORTHO05D009349 2.6e-49 199.5 249 41.8
Sed0022204 Sechium edule HOM05D007385 ORTHO05D009349 4.5e-49 198.7 249 40.6
MELO3C002869.2 Cucumis melo HOM05D007385 ORTHO05D009349 5.9e-49 198.4 255 40.4
Medtr2g061450 Medicago truncatula HOM05D007385 ORTHO05D009349 1.0e-48 197.6 253 38.7
CARHR067280 Cardamine hirsuta HOM05D007385 ORTHO05D009349 1.3e-48 197.2 261 39.8
Ca_29560_v3 Cicer arietinum L. HOM05D007385 ORTHO05D009349 1.7e-48 196.8 253 40.7
Sp5g29350 Schrenkiella parvula HOM05D007385 ORTHO05D009349 1.7e-48 196.8 246 41.5
Carub.0002s2092 Capsella rubella HOM05D007385 ORTHO05D009349 2.2e-48 196.4 262 40.1
Thhalv10018549m.g Eutrema salsugineum HOM05D007385 ORTHO05D009349 2.2e-48 196.4 246 41.1
Psat1g128320 Pisum sativum HOM05D007385 ORTHO05D009349 5.0e-48 195.3 268 37.7
CsaV3_1G037600 Cucumis sativus L. HOM05D007385 ORTHO05D009349 8.5e-48 194.5 249 39.8
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 8.0e-46 188.0 272 37.9
Lj2g0011212 Lotus japonicus HOM05D007385 ORTHO05D009349 1.8e-45 186.8 261 38.3
Sc04g0004300 Simmondsia chinensis HOM05D007385 ORTHO05D009349 3.3e-44 182.6 244 38.1
arahy.Tifrunner.gnm1.ann1.AV1VK7 Arachis hypogaea HOM05D007385 ORTHO05D009349 5.7e-44 181.8 247 38.9
SHI17456 Sapria himalayana HOM05D007385 ORTHO05D009349 2.8e-43 179.5 247 39.3
ECA246G0832 Erigeron canadensis HOM05D007385 ORTHO05D009349 4.8e-43 178.7 216 42.6
Glyma.04G160400 Glycine max HOM05D007385 ORTHO05D009349 8.2e-43 177.9 262 36.6
Phvul.009G202900 Phaseolus vulgaris HOM05D007385 ORTHO05D009349 8.2e-43 177.9 262 36.3
arahy.Tifrunner.gnm1.ann1.9FHV3M Arachis hypogaea HOM05D007385 ORTHO05D009349 1.1e-42 177.6 247 38.5
VMungo1309G0993 Vigna mungo HOM05D007385 ORTHO05D009349 3.1e-42 176.0 256 36.7
ATR0680G420 Amborella trichopoda HOM05D007385 ORTHO05D009349 3.1e-34 149.4 246 34.1
Oeu014423.1 Olea europaea HOM05D007385 ORTHO05D009349 1.6e-33 147.1 90 75.6
HPP92_019471 Vanilla planifolia HOM05D007385 ORTHO05D009349 4.7e-30 135.6 244 32.8
Zm00001eb136360 Zea mays HOM05D007385 ORTHO05D009349 1.0e-24 117.9 228 29.8
BcaC08g46816 Brassica carinata HOM05D007385 ORTHO05D009349 1.3e-24 117.5 124 48.4
Os12g0490000 Oryza sativa ssp. japonica HOM05D007385 ORTHO05D009349 1.2e-20 104.4 118 44.9
Migut.H01126 Erythranthe guttata HOM05D007385 ORTHO05D009349 7.0e-18 95.1 101 46.5
Migut.H01127 Erythranthe guttata HOM05D007385 ORTHO05D009349 1.7e-16 90.5 89 48.3
Migut.H01128 Erythranthe guttata HOM05D007385 ORTHO05D009349 3.9e-16 89.4 92 44.6
Medtr2g060620 Medicago truncatula HOM05D007385 ORTHO05D009349 2.8e-14 83.2 65 52.3
Rhsim08G0143700 Rhododendron simsii HOM05D007385 ORTHO05D009349 2.8e-14 83.2 111 40.5
Actinidia10453 Actinidia chinensis HOM05D007385 ORTHO05D009349 5.4e-10 68.9 79 43.0
CANSAT78G2199 Cannabis sativa HOM05D007385 ORTHO05D009349 3.9e-08 62.8 66 40.9


User provided reference genes

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