Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 7.0e-187 657.1 330 100.0
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 3.1e-102 375.9 307 71.0
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 1.5e-96 357.1 281 71.9
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 5.3e-86 322.0 299 64.2
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 9.0e-86 321.2 299 63.5
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 1.7e-84 317.0 299 63.5
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 1.7e-84 317.0 299 63.5
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 1.2e-40 171.4 284 41.2
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 7.5e-40 168.7 287 41.8
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 6.3e-39 165.6 283 38.5
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 1.0e-36 158.3 279 38.0
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 1.0e-36 158.3 277 40.8
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 3.9e-36 156.4 281 38.8
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 6.6e-36 155.6 317 36.3
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 8.6e-36 155.2 277 40.1
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.5e-35 153.7 279 40.1
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 4.3e-35 152.9 278 37.4
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 4.3e-35 152.9 279 37.3
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 9.5e-35 151.8 250 40.0
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 2.1e-34 150.6 281 38.8
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 2.8e-34 150.2 281 37.0
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 4.7e-34 149.4 277 39.0
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 6.2e-34 149.1 278 36.3
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 1.0e-33 148.3 282 37.2
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 1.0e-33 148.3 286 39.9
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 4.0e-33 146.4 279 37.3
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 1.5e-32 144.4 292 38.4
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 1.5e-32 144.4 276 36.2
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 1.5e-32 144.4 279 35.8
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.9e-31 140.2 279 36.9
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 3.7e-31 139.8 281 38.8
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 4.9e-31 139.4 282 36.2
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 6.4e-31 139.0 279 36.6
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 8.3e-31 138.7 279 36.6
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 1.9e-30 137.5 278 35.6
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 4.1e-30 136.3 282 37.6
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 7.0e-30 135.6 282 37.9
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 1.2e-29 134.8 281 36.7
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 3.5e-29 133.3 254 37.4
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 3.5e-29 133.3 279 35.5
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 4.6e-29 132.9 252 37.3
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 1.0e-28 131.7 280 36.4
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 3.0e-28 130.2 279 35.5
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 5.0e-28 129.4 277 33.9
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.1e-27 128.3 292 32.5
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 1.9e-27 127.5 284 33.8
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.9e-27 127.5 278 36.0
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.5e-27 127.1 256 39.5
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 5.6e-27 125.9 277 34.3
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 5.6e-27 125.9 275 33.8
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 7.3e-27 125.6 292 32.5
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 9.5e-27 125.2 277 32.9
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 9.5e-27 125.2 285 37.5
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 9.5e-27 125.2 327 33.6
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.2e-26 124.8 288 35.4
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 1.6e-26 124.4 279 37.6
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 2.1e-26 124.0 277 33.6
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 2.1e-26 124.0 245 35.1
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 2.8e-26 123.6 281 35.6
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.8e-26 123.6 279 36.2
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 3.6e-26 123.2 264 37.1
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 3.6e-26 123.2 279 36.6
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 3.6e-26 123.2 277 35.4
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 4.7e-26 122.9 264 37.1
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.7e-26 122.9 279 36.2
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 8.1e-26 122.1 269 36.8
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.1e-25 121.7 279 34.8
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 1.4e-25 121.3 264 34.5
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 2.3e-25 120.6 285 34.4
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 3.1e-25 120.2 277 32.5
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 5.2e-25 119.4 260 33.8
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 5.2e-25 119.4 277 32.9
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 5.2e-25 119.4 279 36.2
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 1.5e-24 117.9 277 32.5
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 1.5e-24 117.9 281 33.8
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.6e-24 117.1 285 35.4
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 4.4e-24 116.3 251 35.9
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 4.4e-24 116.3 260 34.2
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 1.3e-23 114.8 258 32.9
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 1.7e-23 114.4 279 33.0
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 2.2e-23 114.0 258 33.7
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 2.9e-23 113.6 260 34.6
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 2.9e-23 113.6 276 32.2
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 2.9e-23 113.6 273 34.8
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 4.9e-23 112.8 292 31.8
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 1.9e-22 110.9 255 36.1
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 3.2e-22 110.2 285 30.9
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 7.1e-22 109.0 278 34.2
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.6e-21 107.8 293 33.4
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.6e-21 107.8 292 33.6
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 2.7e-21 107.1 235 36.6
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 3.5e-21 106.7 276 30.4
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.0e-20 105.1 157 45.2
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 5.1e-20 102.8 162 45.1
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 4.3e-19 99.8 125 47.2
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 9.5e-19 98.6 279 30.8
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 9.5e-19 98.6 228 33.8
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.8e-17 94.4 233 33.9
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 4.0e-17 93.2 295 30.5
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 5.2e-17 92.8 235 31.1
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 6.8e-17 92.4 245 30.6
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 2.0e-16 90.9 144 42.4
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 2.2e-15 87.4 255 29.8
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 2.9e-15 87.0 84 57.1
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 6.4e-15 85.9 72 65.3
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 3.2e-14 83.6 290 29.7
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 7.8e-13 79.0 104 47.1
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 1.0e-12 78.6 78 55.1
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 2.3e-12 77.4 73 53.4
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 8.6e-12 75.5 142 38.0
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.9e-11 74.3 73 52.1
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 3.3e-11 73.6 75 49.3
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 7.3e-11 72.4 250 31.6
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 2.4e-09 67.4 68 50.0
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 5.8e-08 62.8 34 79.4
CAN.G34.12 Capsicum annuum HOM05D006082 ORTHO05D007616 1.3e-07 61.6 74 52.7
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.3e-07 61.6 252 27.4
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 2.9e-07 60.5 287 28.9
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 2.9e-07 60.5 273 24.9
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 1.1e-06 58.5 43 67.4
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.9e-06 57.8 261 26.1
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 2.4e-06 57.4 58 58.6


User provided reference genes

Program Settings