Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.0e-196 687.6 342 100.0
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.8e-167 592.0 342 84.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.7e-167 591.7 342 85.1
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.1e-166 590.1 342 85.1
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 3.2e-158 562.0 324 85.2
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 8.6e-156 553.9 317 85.8
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.2e-151 539.3 328 83.5
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.6e-146 523.1 342 72.2
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 9.9e-136 487.3 340 69.1
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 8.4e-135 484.2 340 67.9
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 2.3e-132 476.1 342 65.8
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 3.6e-130 468.8 342 65.2
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.4e-129 466.8 331 66.5
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 4.0e-129 465.3 342 64.9
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 9.0e-129 464.2 329 66.0
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.5e-128 463.4 335 65.7
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 6.4e-127 458.0 341 62.5
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 8.4e-127 457.6 349 63.3
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 2.4e-126 456.1 339 63.4
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 5.4e-126 454.9 340 62.6
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.6e-125 453.4 341 62.8
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 4.6e-125 451.8 340 62.1
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.3e-124 450.3 348 62.1
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 3.0e-124 449.1 334 63.5
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 6.6e-124 448.0 342 64.6
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 3.3e-123 445.7 341 61.0
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.3e-122 443.7 339 61.1
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.8e-122 442.6 340 60.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.8e-122 441.8 339 60.8
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.1e-122 441.0 319 63.6
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.1e-121 440.7 339 60.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.4e-121 439.5 319 63.6
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.4e-121 439.5 328 62.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 5.3e-121 438.3 327 64.5
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 9.0e-121 437.6 340 64.1
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.5e-120 436.8 332 63.3
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 3.4e-120 435.6 340 60.6
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.3e-119 433.7 338 59.2
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.9e-119 431.8 340 63.5
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 4.9e-119 431.8 316 65.8
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 6.4e-119 431.4 324 62.3
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 8.4e-119 431.0 344 61.0
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.9e-118 429.9 343 61.2
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 5.4e-118 428.3 348 60.6
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.2e-117 427.2 324 61.1
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.1e-117 426.4 328 61.3
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 3.5e-117 425.6 335 59.7
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.6e-117 425.2 298 67.8
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 7.9e-117 424.5 344 59.9
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.8e-116 423.3 325 60.3
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.9e-116 422.2 325 60.0
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.9e-116 422.2 325 60.0
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 5.6e-115 418.3 331 60.4
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 1.6e-114 416.8 328 60.4
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.4e-113 413.7 330 58.8
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.4e-113 413.7 331 59.8
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 2.4e-113 412.9 338 57.1
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 9.0e-113 411.0 328 60.1
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 4.5e-112 408.7 296 63.9
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 4.5e-112 408.7 296 64.2
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 4.5e-112 408.7 334 58.4
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 7.6e-112 407.9 336 57.4
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 9.9e-112 407.5 328 59.5
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.2e-111 406.4 321 59.8
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.2e-111 406.4 338 55.6
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.1e-110 404.1 294 63.9
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.9e-110 403.3 309 59.5
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.9e-110 403.3 339 55.8
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.9e-110 403.3 295 67.8
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 4.2e-110 402.1 301 62.5
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.2e-110 402.1 280 65.4
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 7.1e-110 401.4 309 59.5
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.6e-109 400.2 328 58.2
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 2.7e-109 399.4 340 57.1
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.0e-109 398.3 336 55.7
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 6.0e-109 398.3 336 55.4
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.3e-108 396.4 335 57.6
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 4.3e-107 392.1 346 56.6
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 4.5e-104 382.1 343 53.4
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 7.6e-104 381.3 296 59.8
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 2.2e-103 379.8 328 56.4
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 9.3e-102 374.4 351 52.7
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 3.5e-101 372.5 340 53.8
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.0e-100 369.4 324 54.6
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 5.1e-100 368.6 336 52.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 5.1e-100 368.6 325 54.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 6.7e-100 368.2 326 54.6
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.5e-99 367.1 348 52.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.5e-99 366.3 289 59.2
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.3e-99 365.9 327 53.8
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.8e-98 362.8 336 51.2
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 8.2e-98 361.3 324 54.3
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.1e-97 360.9 327 51.1
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-97 360.9 327 51.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.0e-96 356.7 328 51.5
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 2.0e-96 356.7 327 50.8
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.0e-96 356.7 328 51.5
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 4.5e-96 355.5 339 54.9
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.2e-94 349.4 285 55.8
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 9.3e-94 347.8 336 50.9
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.9e-92 342.4 220 73.2
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 6.7e-92 341.7 338 49.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 8.5e-87 324.7 250 60.8
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 8.8e-84 314.7 325 47.7
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.0e-79 301.2 296 49.7
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.5e-75 287.3 332 44.0
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 2.6e-75 286.6 303 45.2
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.3e-74 284.3 270 53.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.4e-73 280.8 289 47.1
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 3.1e-73 279.6 337 42.7
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.8e-65 253.8 348 39.7
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 4.1e-65 252.7 294 41.5
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.5e-59 234.2 190 55.3
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.5e-59 234.2 309 41.7
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-50 204.1 288 38.5
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.5e-48 196.4 288 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-47 194.5 293 36.5
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-47 192.6 310 36.8
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-45 187.2 315 34.6
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.0e-44 183.3 154 53.9
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 5.2e-44 182.6 282 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-41 174.1 291 35.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.0e-41 172.2 334 31.7
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-40 170.2 307 32.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.6e-40 169.5 293 34.5
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.0e-39 166.8 284 33.5
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-39 166.0 315 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.6e-39 165.6 295 31.9
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-38 164.9 299 33.4
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-38 163.3 308 32.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.3e-38 162.2 306 32.4
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-36 157.9 236 37.7
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-33 147.5 292 31.2
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-33 147.1 290 30.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-29 134.8 292 29.8
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.4e-28 131.3 318 28.6
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.5e-24 116.7 296 27.4
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.3e-23 114.0 280 29.6
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-14 84.3 63 55.6
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 6.2e-13 79.3 65 52.3
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.2e-11 75.1 156 31.4
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.4e-11 73.6 95 42.1
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.6e-11 72.4 74 40.5


User provided reference genes

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