Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.1e-210 733.4 392 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.0e-168 597.0 398 84.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.3e-168 595.9 399 84.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 6.6e-160 567.8 400 80.5
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 7.3e-159 564.3 393 79.9
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.1e-121 439.9 398 66.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.0e-117 425.6 399 65.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 3.3e-111 406.0 398 63.6
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.0e-108 396.7 406 62.1
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.0e-108 396.7 401 61.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.3e-107 394.0 401 61.1
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.8e-107 392.5 407 61.4
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-105 387.5 407 61.2
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.8e-104 383.6 338 65.1
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 5.7e-103 378.6 402 59.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.7e-102 375.9 396 58.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 4.8e-102 375.6 403 58.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.3e-102 375.2 406 59.4
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.1e-101 372.5 344 64.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-101 371.7 426 56.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-100 369.4 398 57.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-100 369.4 397 60.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.5e-100 369.0 408 56.9
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-99 367.9 398 59.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.8e-99 365.9 410 56.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 5.0e-99 365.5 398 60.1
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.0e-99 365.5 399 58.9
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.9e-98 363.6 395 60.3
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.5e-98 363.2 423 56.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 5.5e-98 362.1 396 57.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 7.2e-98 361.7 395 55.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 9.4e-98 361.3 399 56.4
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-97 360.1 401 56.9
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.1e-97 358.6 399 59.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.0e-96 357.8 408 57.8
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.4e-96 357.5 350 63.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.5e-95 354.0 392 59.4
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.6e-95 353.2 419 57.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-93 347.8 410 56.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.5e-92 344.0 399 57.4
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.0e-92 343.6 401 58.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.6e-92 343.2 407 54.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.4e-92 342.8 313 63.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.3e-91 340.9 427 53.6
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.8e-91 339.3 404 55.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 8.5e-91 338.2 414 56.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 5.5e-90 335.5 393 55.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.2e-89 334.3 398 55.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.6e-89 334.0 410 55.1
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.6e-89 334.0 393 53.9
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 4.7e-89 332.4 410 53.9
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 6.1e-89 332.0 390 57.2
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.6e-87 326.6 401 54.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.3e-86 324.3 405 55.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.8e-85 320.5 413 51.6
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 9.1e-85 318.2 184 88.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.0e-84 317.0 355 56.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.2e-83 313.5 441 49.9
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.8e-83 312.8 408 54.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.5e-83 312.0 354 54.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-82 311.2 367 54.0
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 3.2e-82 309.7 387 52.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.2e-82 309.7 418 53.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 4.2e-82 309.3 441 49.2
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 5.5e-82 308.9 409 50.9
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.7e-81 306.6 398 52.5
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.7e-81 305.8 392 54.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.1e-81 305.4 384 52.6
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 8.0e-81 305.1 387 53.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.3e-80 303.5 401 52.1
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.7e-80 302.0 402 50.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.3e-79 299.7 405 49.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 4.4e-79 299.3 405 49.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.5e-79 298.5 339 53.4
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.7e-78 296.2 318 56.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.7e-78 296.2 399 51.4
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.8e-78 295.8 407 53.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.6e-76 290.8 318 56.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.0e-76 290.4 396 52.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.7e-76 290.0 405 51.4
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.9e-76 288.9 395 50.1
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.9e-75 286.6 373 52.3
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.5e-74 284.3 392 50.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.7e-73 279.3 394 52.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.7e-73 279.3 329 58.1
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.8e-72 277.3 392 52.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.4e-71 273.1 396 49.2
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 7.5e-71 271.9 397 49.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.7e-70 270.8 367 52.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.8e-69 267.3 402 47.3
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.2e-68 264.6 401 46.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.0e-67 261.5 396 48.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.8e-67 259.6 409 46.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.1e-65 253.8 397 49.4
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 8.0e-65 251.9 409 46.0
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-64 251.5 319 50.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 8.8e-64 248.4 401 46.4
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.5e-63 247.7 413 45.5
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.0e-63 247.3 286 57.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 7.5e-63 245.4 385 46.8
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 9.2e-61 238.4 202 75.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.0e-59 235.0 305 53.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.3e-59 234.6 324 50.6
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.6e-59 231.9 393 46.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 3.3e-58 229.9 382 47.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.3e-58 229.9 405 42.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 5.6e-58 229.2 382 47.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 5.6e-58 229.2 382 47.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 7.3e-58 228.8 384 46.4
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 7.3e-58 228.8 392 46.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 8.0e-57 225.3 388 47.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 8.0e-57 225.3 387 48.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.4e-56 224.6 258 59.7
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.0e-56 223.4 383 46.7
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 3.0e-56 223.4 285 52.3
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 4.0e-56 223.0 380 46.6
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.9e-56 221.9 357 47.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.6e-55 220.3 387 46.8
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.6e-55 220.3 392 45.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-55 220.3 282 55.7
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-55 220.3 282 55.7
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.2e-53 213.4 434 40.1
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 5.8e-47 192.6 216 59.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.9e-46 189.5 297 46.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.3e-42 176.8 320 42.2
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.2e-39 168.3 287 42.5
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 4.9e-38 162.9 403 36.2
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.7e-36 157.1 191 56.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 7.8e-36 155.6 238 49.6
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-32 144.4 125 62.4
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-30 138.3 118 71.2
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-30 137.1 302 38.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.2e-29 133.7 106 69.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-28 131.3 210 51.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-28 131.3 210 51.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-24 118.6 220 48.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.4e-24 117.5 221 40.7
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.6e-23 112.5 288 35.1
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.5e-15 88.2 66 74.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-14 84.7 212 42.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-14 84.3 212 40.6
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.2e-14 84.3 220 39.1
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-14 84.0 212 40.6
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.4e-14 82.8 212 40.1
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-14 82.4 212 40.1
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-13 79.3 209 37.8
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.3e-11 75.1 214 31.3
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.3e-10 70.5 158 39.2
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 1.1e-08 65.5 77 57.1
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.2e-07 62.0 164 36.0
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-06 58.2 209 32.1
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 1.7e-06 58.2 148 33.8
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 6.4e-06 56.2 41 73.2
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 8.4e-06 55.8 129 38.0


User provided reference genes

Program Settings