Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.4e-232 809.3 408 100.0
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.1e-218 763.1 408 94.4
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.1e-180 636.0 409 80.2
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.7e-179 632.9 406 79.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.0e-175 619.4 356 86.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.3e-171 605.9 409 76.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 6.6e-171 604.4 409 76.8
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-170 602.8 407 76.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.3e-170 601.7 410 76.3
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-165 586.3 410 75.1
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.3e-162 574.3 408 74.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.0e-147 525.8 423 62.9
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 7.4e-146 521.2 424 63.2
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 8.1e-145 517.7 424 62.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.8e-144 516.5 423 63.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.4e-141 506.9 419 61.6
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.2e-140 503.8 419 60.1
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 7.6e-135 484.6 424 58.5
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 6.3e-129 464.9 412 58.0
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 4.1e-128 462.2 423 55.3
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.9e-127 458.4 372 63.4
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 5.0e-126 455.3 427 56.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 4.2e-125 452.2 420 56.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 8.8e-123 444.5 388 59.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 6.3e-121 438.3 423 53.9
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.9e-119 431.8 413 54.0
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 7.7e-119 431.4 415 53.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 5.5e-117 425.2 428 53.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.6e-116 423.7 426 52.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.7e-116 422.9 425 53.2
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.0e-115 421.0 443 52.4
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.8e-115 420.2 423 52.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.3e-113 414.1 429 52.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 2.2e-113 413.3 423 52.0
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 4.1e-112 409.1 428 51.2
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 7.7e-111 404.8 427 51.1
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 5.5e-109 398.7 428 50.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.2e-108 397.5 436 52.1
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.0e-107 394.4 435 52.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.2e-107 392.1 421 51.5
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.7e-107 391.7 421 49.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.6e-106 389.8 426 47.7
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 5.7e-106 388.7 425 50.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 9.7e-106 387.9 352 57.1
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 2.2e-105 386.7 419 49.6
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.2e-105 386.7 462 47.0
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 2.8e-105 386.3 421 49.2
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 4.8e-105 385.6 425 48.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.4e-104 384.0 428 48.8
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.2e-103 380.9 389 53.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.0e-103 380.2 420 49.8
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.3e-102 377.5 427 48.2
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.9e-102 376.3 423 48.9
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 8.5e-102 374.8 422 47.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 8.5e-102 374.8 422 47.9
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 8.5e-102 374.8 422 47.9
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.5e-101 374.0 418 49.5
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 3.2e-101 372.9 425 47.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.2e-101 371.7 403 51.9
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.6e-100 370.5 424 46.9
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 2.1e-100 370.2 388 50.8
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.6e-100 369.4 420 47.6
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.7e-100 369.0 425 48.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.7e-100 369.0 415 46.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 6.1e-100 368.6 421 47.7
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 8.0e-100 368.2 423 46.8
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.0e-99 366.3 423 47.8
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.0e-99 365.9 426 47.2
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.0e-99 365.9 421 47.3
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 5.7e-98 362.1 423 47.5
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 7.5e-98 361.7 403 50.6
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 9.7e-98 361.3 426 46.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 9.7e-98 361.3 419 49.6
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.7e-97 359.4 428 46.0
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-96 357.5 413 47.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 4.1e-96 355.9 391 48.1
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.6e-95 354.0 377 50.4
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.6e-95 354.0 422 45.7
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.0e-95 353.6 407 49.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 4.5e-95 352.4 429 45.9
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 5.9e-95 352.1 431 45.7
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.7e-94 350.5 429 45.7
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.7e-94 350.5 431 45.7
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 3.8e-94 349.4 426 46.2
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.8e-94 349.4 427 46.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.5e-94 348.6 426 45.3
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.5e-93 346.7 413 46.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.2e-92 344.4 425 45.4
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.7e-92 343.2 431 46.2
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.1e-92 342.0 419 48.4
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 6.1e-92 342.0 416 46.2
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-91 340.5 411 46.5
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.3e-91 340.1 460 43.0
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.3e-91 340.1 464 42.7
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 6.8e-91 338.6 422 46.0
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 8.8e-91 338.2 422 46.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.5e-90 337.4 382 48.2
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-89 332.8 420 44.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.3e-86 323.6 423 44.2
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 8.6e-86 321.6 360 49.2
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 2.8e-84 316.6 400 45.8
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 3.6e-84 316.2 331 50.2
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.0e-82 310.5 423 44.4
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 4.9e-81 305.8 406 41.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.4e-80 304.3 422 43.1
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.0e-75 288.1 402 42.5
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.1e-72 278.1 358 46.4
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.2e-67 259.2 424 37.3
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-65 254.6 424 36.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 3.2e-64 250.0 334 47.9
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.3e-61 240.0 416 37.0
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.8e-60 236.9 372 36.0
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.1e-59 235.0 211 58.8
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 6.8e-59 232.3 346 37.9
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 4.6e-55 219.5 143 74.1
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 3.9e-54 216.5 253 50.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 3.6e-52 209.9 383 37.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.8e-51 207.6 206 50.0
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 7.3e-45 185.7 421 30.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.3e-44 184.9 328 35.7
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 8.4e-41 172.2 162 54.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 8.4e-41 172.2 427 30.2
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 5.4e-40 169.5 182 42.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.5e-37 160.6 452 30.5
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 7.3e-37 159.1 446 28.9
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.1e-36 157.5 441 29.5
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.4e-35 154.8 430 30.7
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.4e-34 150.2 393 29.3
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-31 140.6 415 27.7
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.6e-29 132.9 491 24.6
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.8e-22 111.3 200 35.5
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-20 104.0 312 28.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.9e-19 99.4 220 31.8
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 3.0e-14 84.0 76 48.7
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 3.3e-13 80.5 96 45.8
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 9.7e-13 79.0 81 44.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.3e-12 78.6 54 61.1
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-08 64.7 62 46.8
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.2e-08 63.9 59 54.2
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.2e-08 63.5 232 25.4
MD15G1008600 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-06 57.8 66 50.0


User provided reference genes

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