Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 2090.8 1083 100.0
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1996.5 1166 91.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1863.6 1096 89.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1850.5 1096 88.6
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1612.8 1101 77.5
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1601.3 1099 77.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1578.1 1112 75.6
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1568.1 1111 75.2
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1546.9 1114 74.3
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1545.8 1114 74.2
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1544.3 1102 74.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1542.3 1096 74.9
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1541.9 1116 74.2
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1537.3 1113 73.9
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1536.9 1115 73.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1531.9 1100 74.5
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1531.9 1101 74.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1530.0 1111 74.0
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1529.2 1113 73.2
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1522.7 1102 73.4
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1513.8 1099 72.7
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1510.0 1116 72.3
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1506.9 1104 72.6
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1506.5 1101 73.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1492.6 1103 72.6
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1489.2 1104 72.0
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1483.4 1101 71.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1483.0 1096 72.4
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1116 71.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1116 71.2
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1101 71.9
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1473.0 1057 74.4
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1111 71.6
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1073 74.1
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1097 72.5
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1469.9 1096 72.0
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1467.2 1110 71.0
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1462.6 1108 71.3
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1461.4 1112 70.9
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1099 70.8
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1101 70.9
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1446.0 1100 70.8
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1445.3 1105 70.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1444.1 1099 70.2
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1442.9 1099 70.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1441.0 1098 70.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1438.3 1096 71.1
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1436.0 1098 69.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1432.5 1099 70.2
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1432.2 1094 70.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1431.0 1102 70.7
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1426.8 1102 69.5
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1424.8 1094 70.2
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1420.2 1104 68.9
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1406.7 1109 68.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1400.6 1112 67.7
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1399.4 1109 67.9
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1109 67.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1390.6 1103 67.8
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1389.0 1101 67.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1383.2 1095 68.1
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1380.9 1103 67.0
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1378.2 1130 65.9
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1377.5 1108 66.9
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1375.9 1090 68.8
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1375.1 1116 66.7
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1372.5 1111 66.7
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1370.1 1130 65.7
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1366.3 1092 66.9
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1364.0 1094 69.9
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1357.8 1103 66.2
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1356.3 983 73.9
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1354.7 1097 66.5
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1354.3 1112 65.6
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1351.3 1136 66.8
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1349.0 1103 66.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1347.8 1097 67.0
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1345.1 1098 66.2
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1339.3 1111 67.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1336.2 1097 66.0
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1336.2 1036 70.7
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1333.2 1191 63.4
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1332.8 1112 66.0
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1332.0 1108 65.3
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1328.9 1103 65.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1320.1 1097 65.1
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1320.1 1100 66.4
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1317.0 1029 68.9
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1313.1 1139 64.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1306.6 1122 65.2
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1303.9 1100 64.7
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1268.4 1069 64.8
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1265.4 1076 64.9
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1256.5 1090 64.1
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1253.0 1098 63.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1253.0 1108 60.5
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1251.1 1265 57.9
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1248.8 1174 62.0
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1231.9 1098 61.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1229.9 1099 60.5
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1223.0 1108 60.8
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1215.7 1054 62.6
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1180.6 1109 60.6
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1144.0 1098 59.0
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1128.6 903 68.1
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1122.1 771 77.3
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1098.2 941 63.0
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 8.4e-306 1053.9 942 62.5
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.5e-286 989.2 996 57.6
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 6.7e-279 964.5 1115 49.8
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.4e-276 956.1 728 71.3
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.9e-275 951.4 1113 48.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.7e-274 949.9 536 91.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.5e-270 936.8 666 74.8
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 9.7e-270 934.1 533 91.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.3e-258 897.1 879 59.8
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.2e-257 891.3 1132 47.3
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.9e-242 842.8 794 61.0
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.7e-237 827.0 1118 44.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 9.8e-230 801.2 1094 43.3
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.3e-207 726.9 745 57.3
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.7e-203 713.4 557 70.0
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.9e-197 693.3 574 66.0
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.8e-189 666.4 557 65.7
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.1e-184 650.6 849 49.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.1e-183 646.7 566 63.8
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 4.5e-182 642.9 381 87.9
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.0e-178 631.7 1258 36.1
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.4e-172 610.5 841 45.3
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.4e-167 594.0 454 68.9
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.6e-139 501.5 356 75.3
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.7e-133 481.5 366 72.4
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 8.5e-133 479.2 343 74.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.5e-132 477.6 359 70.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.3e-130 471.1 419 60.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.8e-114 418.3 329 68.4
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 4.4e-105 387.1 292 70.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.1e-103 382.5 282 72.3
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.3e-101 374.8 353 61.5
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 9.2e-95 352.8 228 79.4
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.9e-79 302.0 336 50.9
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.7e-72 278.9 166 81.9
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.1e-67 261.9 194 73.7
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 3.7e-59 234.6 176 69.9
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.0e-58 231.1 162 71.6
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.2e-54 219.5 130 81.5
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.9e-52 212.2 130 78.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 7.4e-52 210.3 129 83.7
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.0e-48 199.9 137 70.1
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.7e-45 187.2 122 78.7
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.2e-39 168.3 114 72.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.3e-36 157.9 84 89.3
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.7e-35 154.8 100 76.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.1e-34 151.8 182 50.5
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 6.5e-32 144.1 112 67.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 3.2e-31 141.7 111 64.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 8.8e-29 133.7 86 74.4
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.7e-28 131.0 71 84.5
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-27 129.8 92 73.9
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 4.8e-27 127.9 200 34.5
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 6.3e-27 127.5 88 76.1
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.1e-26 123.6 75 76.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-25 122.9 79 70.9
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 2.9e-24 118.6 81 70.4
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 8.5e-24 117.1 72 73.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.5e-24 117.1 72 73.6
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 8.2e-19 100.5 100 54.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 2.6e-17 95.5 83 62.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 2.6e-17 95.5 83 62.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.9e-17 94.4 62 77.4
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 5.9e-17 94.4 62 77.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 7.7e-17 94.0 71 64.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.1e-15 90.1 49 89.8
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.3e-13 82.4 58 72.4
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 8.3e-11 73.9 48 77.1
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 1.8e-10 72.8 50 76.0
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.6e-09 69.7 53 66.0
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.2e-08 65.9 52 59.6
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 8.0e-06 57.4 38 68.4


User provided reference genes

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