Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3865.8 1960 100.0
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3684.4 1979 94.7
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 3407.1 1961 87.2
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 3381.3 1962 86.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 3374.3 1961 86.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 3335.8 1963 85.6
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 3288.8 1962 85.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2498.4 1967 64.1
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2395.2 2037 60.5
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2358.9 1981 60.3
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2344.7 1969 60.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2339.7 1965 60.2
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2336.6 1959 59.2
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2328.9 1971 59.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2322.4 1974 60.1
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2306.9 1976 59.2
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2304.6 1971 59.0
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2271.1 1959 58.4
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2251.1 1988 57.7
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2248.0 2169 54.5
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2241.1 1999 57.7
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2239.9 1970 57.4
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2223.4 1966 57.5
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2215.3 1983 58.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2213.7 1974 56.7
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2205.3 1971 56.6
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2196.0 1955 57.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2196.0 1981 56.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2195.6 2145 54.2
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2194.9 1957 56.2
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 1966 56.8
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2191.4 1956 56.4
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2188.3 1974 56.8
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2187.9 1982 57.0
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2184.1 1976 56.6
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2182.9 1975 56.2
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1956 58.0
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1960 56.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2178.3 1976 56.6
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2166.3 1952 56.4
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2159.4 1867 58.2
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2155.6 1973 55.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2149.0 1948 57.1
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2126.3 1979 54.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2119.0 1979 54.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2114.0 1996 54.5
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2101.2 1980 54.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2078.9 2171 51.5
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2070.0 1842 56.6
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2067.4 1974 54.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2045.0 1974 54.1
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2044.2 1972 54.4
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2041.5 1948 53.7
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2041.2 1977 54.7
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2031.9 2269 47.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2021.1 1988 53.7
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1973 52.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2014.6 1976 53.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2006.5 1974 52.4
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2006.5 1979 52.5
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2003.0 1986 52.3
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1996.9 1976 52.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1995.3 1985 52.6
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1994.5 1978 52.4
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1988.4 2001 51.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1983.0 1808 55.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1981.1 2002 51.6
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1980.3 1983 52.2
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1978.0 1980 52.3
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1957.6 1948 51.9
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1953.3 2007 50.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1929.1 1613 60.9
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1917.5 1986 50.8
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1860.1 1953 49.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1846.2 1966 50.6
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1833.2 1850 51.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1759.6 2006 48.0
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1666.4 1286 64.2
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1501.5 1198 63.1
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1397.5 1267 57.1
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1376.7 1829 42.4
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1308.1 1440 49.0
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1230.7 2051 36.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1206.0 2025 36.7
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1188.7 1090 56.2
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1139.4 1174 52.4
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1138.6 2040 35.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 6.7e-311 1071.6 1004 55.0
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.1e-291 1006.9 2137 33.1
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.1e-259 900.6 964 50.5
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 6.2e-259 899.0 773 58.5
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.4e-236 822.4 999 44.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 8.5e-232 808.9 888 48.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.5e-225 786.9 774 51.6
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 5.9e-225 786.2 1122 41.4
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-224 785.0 998 43.9
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-177 629.0 500 63.6
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 9.9e-172 609.4 670 49.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.9e-167 595.1 525 58.3
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.0e-165 587.4 536 55.4
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 7.9e-153 546.6 536 54.1
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 9.0e-133 479.9 413 58.6
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 6.9e-125 453.8 449 50.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.2e-122 443.7 651 40.7
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.8e-120 439.1 430 50.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 6.7e-120 437.2 314 69.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 3.4e-116 424.9 850 32.9
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.5e-90 339.0 231 73.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 9.5e-90 337.0 396 45.5
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 4.7e-89 334.7 270 60.4
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 5.7e-87 327.8 336 50.6
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 8.0e-81 307.4 350 52.0
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.2e-68 266.9 231 56.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 3.3e-66 258.8 374 42.0
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 6.8e-56 224.6 195 55.9
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.8e-54 218.8 195 54.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.3e-51 210.3 294 40.8
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 3.0e-51 209.1 522 29.9
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.7e-51 207.6 314 39.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.6e-49 202.2 230 45.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-46 193.0 164 55.5
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.0e-40 172.2 298 34.6
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.9e-30 139.4 277 35.4
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 6.7e-27 128.3 222 36.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.5e-26 126.3 97 64.9
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.3e-26 125.6 140 50.0
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.4e-24 120.6 125 48.8
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.8e-24 120.2 127 49.6
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.4e-24 119.8 94 58.5
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.0e-20 105.1 159 40.9
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.0e-19 102.8 285 28.4
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.1e-19 102.1 140 40.0
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 6.7e-19 101.7 100 51.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.9e-18 100.1 290 27.6
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 8.2e-17 94.7 141 38.3
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.8e-16 93.6 96 47.9
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.1e-16 92.4 132 44.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.2e-15 90.9 178 33.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.4e-15 89.4 91 51.6
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 74 58.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 74 58.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.0e-14 87.8 74 56.8
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 5.0e-14 85.5 118 39.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.4e-13 84.0 75 53.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 2.5e-13 83.2 116 38.8
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 7.2e-13 81.6 204 28.4
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 6.1e-12 78.6 88 40.9
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 2.3e-11 76.6 119 37.0
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 2.0e-10 73.6 88 38.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 5.7e-10 72.0 55 56.4
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 9.7e-10 71.2 114 38.6
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-09 70.1 53 56.6
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 3.7e-09 69.3 32 87.5
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 3.7e-09 69.3 74 39.2
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.8e-08 67.0 94 38.3
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.4e-08 66.6 55 52.7
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 9.1e-08 64.7 111 36.0
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.5e-07 63.9 105 36.2
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 3.4e-07 62.8 139 30.2
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 3.8e-06 59.3 57 50.9
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 6.5e-06 58.5 46 56.5


User provided reference genes

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