Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.3e-205 719.5 389 100.0
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.2e-155 552.7 352 90.9
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 3.4e-124 449.1 355 76.9
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 7.1e-114 414.8 345 73.9
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 5.3e-93 345.5 346 64.7
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.2e-76 291.2 347 55.0
Solyc03g059470.1 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.0e-75 288.1 342 58.2
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 9.7e-63 245.0 347 50.1
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 3.8e-59 233.0 348 50.3
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.7e-54 217.6 349 48.4
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.3e-51 208.0 273 54.6
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 2.9e-51 206.8 361 44.3
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 4.4e-47 193.0 349 43.8
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 1.0e-35 155.2 364 40.1
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 2.3e-32 144.1 323 40.6
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 6.4e-30 136.0 312 38.1
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 5.4e-29 132.9 308 41.9
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 4.3e-26 123.2 341 34.3
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.1e-25 120.9 335 36.1
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 8.0e-25 119.0 302 37.1
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.2e-24 116.3 263 40.3
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 3.7e-22 110.2 309 38.2
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.4e-21 108.2 208 42.3
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 1.3e-19 101.7 245 40.8
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.3e-19 100.9 273 35.9
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.3e-19 100.9 273 35.9
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 2.3e-19 100.9 233 38.2
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.9e-19 100.1 220 37.7
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.9e-18 97.8 234 39.7
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 8.9e-16 89.0 304 33.6
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 2.6e-15 87.4 272 32.4
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 1.3e-14 85.1 318 32.7
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 6.4e-14 82.8 199 37.7
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.4e-13 81.6 210 39.0
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 5.4e-13 79.7 225 35.6
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 9.2e-13 79.0 305 30.2
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 1.6e-12 78.2 261 33.3
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 4.6e-12 76.6 305 31.8
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 6.0e-12 76.3 212 38.2
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 1.7e-11 74.7 64 64.1
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 3.0e-11 73.9 321 33.3
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.1e-11 73.2 222 34.7
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 6.6e-11 72.8 209 38.3
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 8.6e-11 72.4 306 32.0
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 1.1e-10 72.0 146 39.7
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.5e-10 71.6 127 43.3
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 1.5e-10 71.6 215 33.5
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.5e-10 71.6 223 35.0
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 3.3e-10 70.5 200 34.5
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.3e-10 70.5 191 36.1
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 4.3e-10 70.1 212 34.4
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 5.6e-10 69.7 216 34.3
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.6e-10 69.7 91 50.5
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.6e-10 69.7 91 50.5
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 5.6e-10 69.7 91 50.5
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 5.6e-10 69.7 320 28.1
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 5.6e-10 69.7 228 35.5
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 7.3e-10 69.3 313 30.4
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 9.5e-10 68.9 227 33.5
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-09 68.6 183 34.4
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.6e-09 68.2 108 46.3
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 1.6e-09 68.2 204 32.8
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 1.6e-09 68.2 71 54.9
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.6e-09 68.2 143 38.5
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 2.1e-09 67.8 145 38.6
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.1e-09 67.8 328 29.9
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 2.1e-09 67.8 289 30.8
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.1e-09 67.8 64 59.4
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.6e-09 67.0 195 32.8
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 3.6e-09 67.0 245 31.8
Nitab4.5_0000125g0180 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.6e-09 67.0 54 72.2
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.6e-09 67.0 191 35.1
CAN.G497.106 Capsicum annuum HOM05D003787 ORTHO05D001736 6.2e-09 66.2 102 40.2
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 6.2e-09 66.2 215 35.8
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 8.1e-09 65.9 86 47.7
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.1e-08 65.5 71 52.1
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 1.1e-08 65.5 235 33.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.4e-08 65.1 221 31.7
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 1.8e-08 64.7 224 34.4
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.8e-08 64.7 318 29.6
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.8e-08 64.7 269 30.9
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 1.8e-08 64.7 304 30.6
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.3e-08 64.3 76 55.3
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.1e-08 63.9 205 36.1
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 3.1e-08 63.9 325 26.8
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.1e-08 63.9 317 28.4
HanXRQChr07g0199751 Helianthus annuus HOM05D003787 ORTHO05D001736 3.1e-08 63.9 160 35.0
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 4.0e-08 63.5 126 37.3
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 5.2e-08 63.2 119 39.5
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 6.8e-08 62.8 104 41.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 6.8e-08 62.8 158 32.9
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 6.8e-08 62.8 220 34.5
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 6.8e-08 62.8 237 29.5
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 6.8e-08 62.8 226 32.7
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 6.8e-08 62.8 312 31.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.8e-08 62.8 235 32.3
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.8e-08 62.8 289 30.8
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 8.9e-08 62.4 199 32.2
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 8.9e-08 62.4 335 29.3
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 8.9e-08 62.4 195 35.4
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 8.9e-08 62.4 330 31.5
arahy.Tifrunner.gnm1.ann1.1H4V42 Arachis hypogaea HOM05D003787 ORTHO05D001736 1.2e-07 62.0 145 34.5
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.2e-07 62.0 53 64.2
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.2e-07 62.0 195 35.4
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.2e-07 62.0 292 32.5
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 1.5e-07 61.6 79 51.9
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 1.5e-07 61.6 226 31.0
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.5e-07 61.6 160 36.2
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.0e-07 61.2 208 33.2
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 2.6e-07 60.8 318 28.9
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 3.4e-07 60.5 59 64.4
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 3.4e-07 60.5 59 57.6
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 3.4e-07 60.5 202 34.7
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 3.4e-07 60.5 226 30.5
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 3.4e-07 60.5 211 32.2
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 3.4e-07 60.5 58 58.6
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.4e-07 60.5 293 31.4
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 4.4e-07 60.1 72 50.0
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 4.4e-07 60.1 197 35.5
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 4.4e-07 60.1 208 33.7
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.8e-07 59.7 200 34.5
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 5.8e-07 59.7 61 55.7
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 5.8e-07 59.7 207 35.7
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 5.8e-07 59.7 323 26.6
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.6e-07 59.3 218 30.3
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 7.6e-07 59.3 166 34.9
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 9.9e-07 58.9 284 29.2
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 9.9e-07 58.9 218 33.5
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 9.9e-07 58.9 233 34.3
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.3e-06 58.5 218 30.3
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.3e-06 58.5 208 32.2
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 1.3e-06 58.5 305 28.2
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 2.2e-06 57.8 186 33.3
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 2.9e-06 57.4 218 29.8
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 2.9e-06 57.4 95 48.4
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 2.9e-06 57.4 225 26.7
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.7e-06 57.0 212 32.1
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 3.7e-06 57.0 186 35.5
BcaC05g30391 Brassica carinata HOM05D012214 ORTHO05D001736 3.7e-06 57.0 72 45.8
C09p75530 Brassica napus HOM05D012214 ORTHO05D001736 3.7e-06 57.0 72 45.8
BolC5t35106H Brassica oleracea HOM05D012214 ORTHO05D001736 3.7e-06 57.0 72 45.8
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 3.7e-06 57.0 217 29.5
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 3.7e-06 57.0 77 49.4
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 4.9e-06 56.6 54 61.1
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 6.4e-06 56.2 200 30.5
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 6.4e-06 56.2 163 33.7
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 8.4e-06 55.8 221 32.6
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 8.4e-06 55.8 217 30.4


User provided reference genes

Program Settings