Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.8e-102 374.0 192 100.0
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.7e-92 342.8 181 95.6
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.8e-87 325.5 191 86.4
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 8.1e-87 323.9 191 85.9
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.1e-87 323.9 191 86.4
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 5.4e-83 311.2 191 82.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.9e-73 278.5 198 76.3
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.9e-64 249.6 169 72.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.7e-63 245.4 191 65.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.8e-63 245.0 169 69.8
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-62 243.8 175 67.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 3.1e-62 242.3 188 65.4
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.1e-62 242.3 172 69.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.1e-62 241.9 191 64.9
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 4.1e-62 241.9 177 67.8
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.3e-62 241.5 172 68.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.9e-62 241.1 161 72.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.5e-61 240.0 196 62.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.0e-61 239.6 162 72.2
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.6e-61 239.2 163 70.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 7.6e-61 237.7 191 62.8
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 7.6e-61 237.7 178 65.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.7e-60 236.5 190 65.8
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.8e-60 235.3 172 67.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.0e-60 235.0 182 64.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.5e-60 234.6 173 67.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 6.5e-60 234.6 180 64.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 6.5e-60 234.6 172 65.1
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.5e-60 234.2 186 64.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.1e-59 233.8 156 68.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.4e-59 233.4 160 70.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.5e-59 232.6 188 62.2
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.5e-59 232.6 150 74.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.2e-59 231.9 186 62.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 5.5e-59 231.5 199 58.8
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 7.2e-59 231.1 169 68.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.2e-58 230.3 184 61.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.6e-58 229.9 175 66.3
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.6e-58 229.9 193 60.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.6e-58 229.9 193 61.7
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.6e-58 229.9 162 72.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.1e-58 229.6 175 63.4
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.1e-58 229.6 181 64.6
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-58 229.6 162 68.5
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-58 229.6 175 64.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.1e-58 229.6 202 60.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 3.6e-58 228.8 191 60.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-57 226.9 154 69.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.4e-57 226.9 182 63.2
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.3e-57 226.1 169 66.9
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.0e-57 225.7 167 65.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.9e-57 225.3 167 65.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 5.1e-57 224.9 160 69.4
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 5.1e-57 224.9 159 67.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.1e-57 224.9 160 68.1
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 6.7e-57 224.6 172 65.1
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 6.7e-57 224.6 172 65.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.7e-57 224.6 182 61.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 8.8e-57 224.2 178 63.5
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 8.8e-57 224.2 173 65.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 8.8e-57 224.2 173 65.3
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 8.8e-57 224.2 171 62.6
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 8.8e-57 224.2 171 63.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 8.8e-57 224.2 215 59.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.5e-56 223.4 169 65.7
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.9e-56 223.0 160 67.5
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.9e-56 223.0 167 65.3
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.9e-56 223.0 167 65.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.5e-56 222.6 167 64.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.3e-56 222.2 160 66.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.3e-56 221.9 156 70.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.3e-56 221.9 156 70.5
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.7e-56 221.5 182 59.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 7.4e-56 221.1 182 59.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 9.7e-56 220.7 157 68.2
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.3e-55 220.3 161 67.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.7e-55 219.9 191 57.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.2e-55 219.5 165 66.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.8e-55 219.2 191 59.2
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.8e-55 219.2 217 57.1
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.7e-55 218.8 193 56.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 3.7e-55 218.8 199 58.8
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.7e-55 218.8 195 55.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 4.8e-55 218.4 178 61.2
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-54 217.2 166 62.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 4.1e-54 215.3 159 67.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.3e-54 214.9 165 64.8
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.3e-54 214.9 192 57.3
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 9.1e-54 214.2 159 67.3
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.1e-54 214.2 197 57.4
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.2e-53 213.8 183 60.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.2e-53 213.8 176 57.4
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.5e-53 213.4 157 66.2
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 3.4e-53 212.2 191 58.6
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 4.5e-53 211.8 160 66.9
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.9e-53 211.5 158 63.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 7.7e-53 211.1 189 58.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.0e-52 210.7 168 60.7
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.0e-52 210.7 179 60.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.7e-52 209.9 191 57.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.2e-52 209.5 180 60.6
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.8e-52 208.8 180 59.4
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 3.8e-52 208.8 155 68.4
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.1e-51 207.2 167 59.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.4e-51 206.8 159 62.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.4e-51 206.8 182 58.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.2e-51 204.5 188 58.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.2e-51 204.5 155 67.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.2e-50 203.8 207 54.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 7.9e-50 201.1 164 60.4
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-49 200.3 160 61.9
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 5.1e-49 198.4 168 61.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.3e-48 195.7 192 52.6
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.3e-48 195.7 176 56.2
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.3e-48 195.7 181 56.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 9.7e-48 194.1 215 51.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.8e-47 192.6 191 55.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.7e-47 192.2 151 60.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.8e-47 191.8 176 59.7
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 8.2e-47 191.0 155 63.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-46 190.3 141 65.2
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.6e-45 186.0 189 54.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 7.7e-45 184.5 165 54.5
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 8.5e-44 181.0 168 56.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.6e-42 175.6 160 56.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.8e-41 173.3 153 54.2
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.7e-41 171.4 157 53.5
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 9.7e-40 167.5 154 55.2
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.4e-33 147.1 114 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.0e-33 145.6 151 50.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.1e-30 137.5 189 41.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.4e-30 136.3 179 41.9
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.0e-29 133.3 85 74.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.0e-28 131.0 153 46.4
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.0e-28 131.0 93 68.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.2e-28 129.8 102 65.7
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.1e-27 127.5 114 60.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-27 126.7 114 58.8
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-27 126.7 113 54.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-26 122.9 95 63.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 8.0e-26 121.3 90 65.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.4e-25 120.6 95 58.9
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 7.5e-24 114.8 103 59.2
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.1e-22 110.9 131 48.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.0e-20 104.4 137 46.0
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.5e-19 99.8 76 71.1
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 5.5e-19 98.6 76 61.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 8.9e-17 91.3 66 60.6
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-11 74.3 69 52.2
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.2e-10 70.9 63 60.3
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.3e-07 60.8 121 29.8
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 2.2e-07 60.1 67 53.7
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.9e-07 59.7 46 58.7


User provided reference genes

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