Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 7.1e-130 467.2 230 100.0
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.1e-122 443.4 219 99.5
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 2.3e-112 409.1 224 91.5
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 3.3e-111 405.2 212 92.9
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 7.4e-111 404.1 212 92.5
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 8.8e-104 380.6 218 83.9
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 1.1e-103 380.2 210 86.7
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 9.7e-103 377.1 210 86.2
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 3.7e-102 375.2 209 86.1
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 3.7e-102 375.2 208 87.0
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 6.3e-102 374.4 209 85.2
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 3.1e-101 372.1 210 86.7
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 4.1e-101 371.7 210 86.7
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 1.5e-100 369.8 210 84.3
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 1.5e-100 369.8 209 84.7
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 2.0e-100 369.4 210 85.7
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 2.6e-100 369.0 209 84.7
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 4.5e-100 368.2 210 84.8
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 5.9e-100 367.9 209 84.2
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 1.3e-99 366.7 211 83.4
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.2e-99 365.9 210 82.9
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.2e-99 365.9 210 84.8
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 2.2e-99 365.9 209 83.3
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 2.9e-99 365.5 210 84.8
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.8e-99 365.2 210 84.8
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 5.0e-99 364.8 209 83.7
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 6.5e-99 364.4 209 82.8
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 6.5e-99 364.4 210 84.3
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 8.5e-99 364.0 210 84.3
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.1e-98 363.6 210 84.3
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 1.4e-98 363.2 209 84.2
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 1.4e-98 363.2 210 83.8
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.5e-98 362.5 211 82.0
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 2.5e-98 362.5 209 82.8
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 2.5e-98 362.5 209 83.3
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 4.2e-98 361.7 209 82.3
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 5.5e-98 361.3 207 84.1
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 7.2e-98 360.9 208 83.2
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 7.2e-98 360.9 209 83.7
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.2e-97 360.1 209 82.8
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 1.6e-97 359.8 209 82.3
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.7e-97 359.0 210 83.3
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 3.6e-97 358.6 210 81.0
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.6e-97 358.6 210 84.8
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.0e-96 357.1 210 84.3
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-96 356.3 210 82.9
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-96 356.3 210 84.3
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 3.0e-96 355.5 211 81.5
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 3.0e-96 355.5 209 81.3
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 3.0e-96 355.5 224 79.0
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 3.9e-96 355.1 210 81.0
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 3.9e-96 355.1 208 81.7
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.9e-96 355.1 210 82.9
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 5.1e-96 354.8 209 81.8
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 5.1e-96 354.8 209 81.8
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 6.7e-96 354.4 208 82.7
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 6.7e-96 354.4 210 82.9
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.1e-95 353.6 210 82.4
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 1.1e-95 353.6 210 81.0
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.5e-95 353.2 217 78.8
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 2.0e-95 352.8 209 81.3
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 2.6e-95 352.4 209 81.3
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 3.3e-95 352.1 209 80.4
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 4.4e-95 351.7 213 79.8
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 4.4e-95 351.7 209 80.4
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 5.7e-95 351.3 209 79.9
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 5.7e-95 351.3 209 80.4
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 5.7e-95 351.3 209 81.8
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 7.4e-95 350.9 213 79.8
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 7.4e-95 350.9 208 80.3
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 9.7e-95 350.5 209 79.9
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 1.3e-94 350.1 213 79.3
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 1.3e-94 350.1 208 80.3
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.3e-94 350.1 205 82.0
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 1.3e-94 350.1 209 82.8
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.7e-94 349.7 205 83.4
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.7e-94 349.7 209 83.3
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 2.2e-94 349.4 209 81.3
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 4.8e-94 348.2 209 80.9
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 4.8e-94 348.2 213 78.9
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 4.8e-94 348.2 213 78.9
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 4.8e-94 348.2 213 78.9
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.1e-93 347.1 243 72.8
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-93 347.1 211 81.5
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 1.4e-93 346.7 209 81.3
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 3.1e-93 345.5 205 82.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 1.5e-92 343.2 206 80.6
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 1.5e-92 343.2 209 79.4
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.5e-92 342.0 209 78.9
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 4.5e-92 341.7 220 74.5
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 4.5e-92 341.7 209 80.9
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 1.3e-91 340.1 212 78.3
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 1.7e-91 339.7 207 80.2
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 2.2e-91 339.3 206 79.1
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 5.0e-91 338.2 203 81.3
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 1.9e-90 336.3 215 74.9
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 9.4e-90 334.0 215 76.7
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.4e-88 330.1 212 76.4
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.7e-87 324.7 210 75.7
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 1.1e-85 320.5 209 73.7
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.5e-84 315.5 201 76.1
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 6.5e-83 311.2 209 72.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 2.5e-82 309.3 209 70.8
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 1.6e-81 306.6 209 70.3
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 2.1e-81 306.2 209 75.1
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 1.1e-77 293.9 208 71.2
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 1.7e-75 286.6 173 77.5
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 1.9e-74 283.1 212 68.4
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.1e-69 265.4 160 81.2
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 1.6e-68 263.5 159 79.9
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 7.7e-68 261.2 217 64.1
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 1.1e-66 257.3 201 68.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 8.0e-65 251.1 200 61.5
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 1.3e-62 243.8 220 59.5
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 1.4e-61 240.4 199 59.8
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 2.0e-60 236.5 204 57.4
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 3.5e-60 235.7 226 52.7
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 5.6e-58 228.4 206 55.8
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 5.6e-58 228.4 206 55.8
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.6e-57 225.7 215 53.0
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.4e-56 223.8 208 54.8
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.4e-56 223.8 206 55.3
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 6.8e-56 221.5 208 54.3
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 8.9e-56 221.1 133 78.2
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 2.0e-55 219.9 212 53.3
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 3.4e-55 219.2 206 52.9
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 6.4e-54 214.9 212 52.4
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 1.6e-49 200.3 206 50.5
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.6e-49 200.3 206 50.5
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 1.6e-49 200.3 206 50.5
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 2.8e-49 199.5 206 49.5
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 5.2e-48 195.3 119 77.3
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.0e-47 193.4 137 70.8
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 7.5e-47 191.4 167 56.9
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.1e-41 173.3 207 45.4
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 6.2e-41 171.8 97 86.6
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 1.1e-40 171.0 132 58.3
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 6.0e-36 155.2 81 93.8
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 1.0e-35 154.5 161 50.3
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 2.6e-31 139.8 206 39.3
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.6e-31 138.3 210 39.0
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.2e-29 132.5 82 78.0
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.2e-28 131.0 209 37.3
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 4.6e-28 129.0 116 55.2
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 1.7e-27 127.1 88 73.9
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-23 111.7 92 63.0
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-23 111.7 92 63.0
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-23 111.7 92 63.0
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 9.9e-23 111.3 161 38.5
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 1.7e-22 110.5 60 90.0
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 9.3e-21 104.8 51 92.2
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.8e-20 101.7 223 36.3
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 1.7e-19 100.5 96 59.4
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 6.6e-19 98.6 93 60.2
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 8.7e-19 98.2 91 61.5
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 1.8e-16 90.5 86 60.5
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.3e-14 84.3 120 36.7
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 1.1e-13 81.3 46 80.4
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-08 64.7 106 32.1
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 1.0e-06 58.2 45 60.0
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.9e-06 55.8 73 38.4
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 8.4e-06 55.1 84 33.3


User provided reference genes

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