Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.8e-209 730.7 385 100.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.1e-149 531.6 442 69.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.2e-142 510.4 442 67.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 5.2e-141 505.0 443 67.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 5.2e-141 505.0 443 67.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.7e-139 498.8 443 67.3
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.1e-138 495.4 442 65.8
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.3e-131 473.8 442 62.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 8.2e-131 471.1 440 64.3
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.9e-129 464.9 443 61.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-126 457.2 441 59.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 6.1e-126 454.9 443 61.9
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.6e-124 449.5 442 60.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 4.4e-124 448.7 442 60.4
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 4.8e-123 445.3 442 57.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.8e-123 445.3 443 59.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 8.3e-123 444.5 439 60.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.4e-122 443.0 442 59.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 9.1e-122 441.0 453 57.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.5e-121 438.7 437 59.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.8e-120 435.6 437 60.2
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.2e-119 431.4 439 59.7
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.2e-118 430.6 442 56.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-118 429.9 446 58.3
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-118 429.9 446 58.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 2.8e-118 429.5 445 56.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 3.6e-118 429.1 449 56.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.0e-117 427.6 442 55.9
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.8e-117 426.8 436 59.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.3e-117 426.4 444 57.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.8e-117 424.5 442 55.4
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 8.8e-117 424.5 442 55.4
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-116 424.1 441 57.6
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.6e-116 422.9 442 58.1
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.4e-116 422.5 435 58.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 9.8e-116 421.0 444 56.3
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 9.8e-116 421.0 444 56.3
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 9.8e-116 421.0 478 55.6
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.3e-115 420.6 443 56.2
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.3e-115 420.6 443 56.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.3e-115 420.6 442 56.3
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.7e-115 420.2 437 57.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.2e-115 419.9 446 56.7
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.8e-115 419.5 442 58.8
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 6.3e-115 418.3 442 57.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.3e-115 417.9 443 58.7
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.8e-114 416.8 440 56.8
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.4e-114 416.4 445 57.8
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 3.1e-114 416.0 445 53.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.4e-114 415.2 446 56.1
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 5.4e-114 415.2 442 57.5
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 9.2e-114 414.5 446 55.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.2e-114 414.5 446 55.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.2e-113 414.1 445 56.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.2e-113 414.1 443 56.4
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-113 413.7 446 56.1
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 4.5e-113 412.1 487 51.5
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.0e-112 411.0 441 56.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-112 411.0 446 56.1
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.7e-112 410.2 444 54.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.3e-112 409.8 437 55.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.0e-112 408.7 445 53.5
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 5.0e-112 408.7 442 55.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 6.6e-112 408.3 442 55.0
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.6e-112 408.3 437 56.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.3e-111 406.0 443 56.9
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 4.3e-111 405.6 442 55.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 7.3e-111 404.8 442 56.1
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.3e-111 404.8 442 54.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.1e-110 403.3 445 55.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 8.0e-110 401.4 443 54.9
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.4e-109 400.6 439 54.7
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.4e-109 400.6 441 54.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.8e-109 400.2 443 57.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 3.0e-109 399.4 442 53.6
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 8.9e-109 397.9 442 55.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.0e-108 396.7 444 56.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.7e-107 393.7 446 53.4
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.9e-107 392.9 437 55.4
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.9e-107 392.1 439 54.9
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 6.4e-107 391.7 438 54.8
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 8.3e-107 391.3 440 52.3
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.1e-106 391.0 438 54.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.4e-106 390.6 438 53.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.8e-106 390.2 447 54.8
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.2e-106 389.4 443 53.3
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 5.4e-106 388.7 438 54.6
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 7.0e-106 388.3 443 53.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 7.0e-106 388.3 443 53.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.0e-105 386.7 443 52.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 5.9e-105 385.2 443 52.6
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 5.9e-105 385.2 426 54.9
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 7.8e-105 384.8 443 52.8
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.1e-103 380.9 448 53.1
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.9e-103 380.2 443 53.0
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 2.5e-103 379.8 439 54.9
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 5.6e-103 378.6 443 50.3
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.5e-103 377.9 439 53.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-102 377.5 449 52.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-102 377.5 445 50.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.2e-102 377.5 437 52.9
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 3.6e-102 375.9 442 51.8
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.0e-102 374.8 443 51.9
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.0e-102 374.8 434 50.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.1e-101 374.4 468 49.6
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-101 374.4 295 69.8
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 2.3e-101 373.2 443 51.2
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.4e-100 369.4 434 49.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.4e-100 369.0 442 50.7
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.4e-100 369.0 442 50.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 5.8e-100 368.6 444 53.2
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.2e-98 362.8 442 51.1
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.6e-97 360.5 442 48.9
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.0e-96 357.8 442 48.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.3e-96 356.7 443 48.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 7.3e-95 351.7 442 47.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.4e-93 347.4 333 61.3
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.4e-92 342.4 453 51.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 9.9e-92 341.3 441 47.6
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.7e-91 339.3 440 50.5
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.1e-86 323.6 556 40.8
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.1e-81 307.0 399 47.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 6.9e-77 292.0 398 47.5
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.9e-75 286.6 432 45.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.2e-74 283.1 413 45.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 8.1e-70 268.5 440 41.8
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.1e-69 268.1 397 48.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.6e-68 263.5 472 41.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-64 250.8 445 38.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-64 250.8 445 38.7
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.8e-62 242.7 240 60.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.5e-55 220.3 405 41.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 7.4e-55 218.8 431 36.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.4e-53 214.5 446 33.0
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 5.9e-44 182.6 262 46.9
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 9.3e-42 175.3 463 32.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.7e-38 163.3 117 72.6
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.7e-33 147.1 367 34.1
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-27 127.1 114 62.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.6e-25 120.2 69 84.1
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.0e-23 114.4 82 78.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.1e-21 106.7 94 60.6
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.6e-20 104.8 274 34.7
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 3.8e-19 100.1 202 36.1
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-18 98.6 79 67.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 5.7e-15 86.3 139 46.8
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.8e-14 84.0 445 25.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 3.2e-10 70.5 55 69.1
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 9.4e-10 68.9 183 30.1
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.2e-09 68.6 63 54.0
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.0e-08 65.5 296 26.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.0e-08 63.9 70 50.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 6.8e-08 62.8 145 35.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.2e-07 62.0 312 25.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.7e-06 58.2 37 81.1
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 2.2e-06 57.8 64 45.3
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 8.3e-06 55.8 28 82.1


User provided reference genes

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