Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 0.0e+00 1130.9 558 100.0
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 0.0e+00 1118.2 558 98.0
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.1e-290 1002.7 558 88.7
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 7.4e-290 1000.0 558 88.4
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.7e-289 997.7 558 88.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.1e-288 996.1 553 89.0
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.5e-285 984.9 559 87.7
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 5.2e-267 924.1 558 82.1
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 4.1e-264 914.4 555 81.6
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.2e-262 908.7 555 81.1
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.2e-262 908.7 558 79.2
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 8.5e-262 906.7 553 81.0
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.5e-261 905.2 558 80.8
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.2e-261 904.8 558 79.0
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 9.4e-261 903.3 555 80.0
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.6e-260 902.5 558 78.9
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 2.1e-260 902.1 558 80.1
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.0e-259 899.8 556 79.7
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.8e-259 899.0 553 79.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 5.2e-259 897.5 555 80.2
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 5.2e-259 897.5 555 80.2
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 6.7e-259 897.1 555 79.3
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 6.7e-259 897.1 555 79.3
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.2e-258 896.3 558 78.7
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.5e-258 896.0 553 78.5
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 5.7e-258 894.0 558 78.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 7.5e-258 893.6 551 79.1
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 7.5e-258 893.6 558 78.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.3e-257 892.9 559 80.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.3e-257 892.9 556 78.2
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.8e-257 891.7 558 78.1
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 2.8e-257 891.7 558 78.3
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.7e-257 891.3 555 78.9
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.8e-257 891.0 558 78.0
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 8.2e-257 890.2 558 77.8
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.1e-256 889.8 558 77.8
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.8e-256 889.0 551 78.4
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.8e-256 889.0 558 77.8
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.1e-256 888.3 558 78.7
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.3e-256 887.5 555 78.7
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 7.0e-256 887.1 550 78.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 9.1e-256 886.7 558 77.6
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.6e-255 885.9 553 77.9
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 2.7e-255 885.2 550 78.9
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.7e-255 885.2 558 77.4
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 5.9e-255 884.0 550 77.6
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.9e-255 884.0 550 79.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-254 883.2 558 77.2
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.2e-254 882.1 554 78.2
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 2.2e-254 882.1 558 78.5
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 6.5e-254 880.6 550 78.4
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 6.5e-254 880.6 555 79.5
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 6.5e-254 880.6 550 78.5
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.5e-254 880.2 558 77.2
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.1e-253 879.8 550 76.9
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.5e-253 879.4 558 76.7
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.9e-253 879.0 558 77.1
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 2.5e-253 878.6 558 77.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 2.5e-253 878.6 558 77.2
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.2e-253 878.2 558 76.7
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 3.2e-253 878.2 558 77.2
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.1e-252 875.5 555 78.2
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 2.1e-252 875.5 553 77.6
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 6.1e-252 874.0 550 76.9
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 8.0e-252 873.6 557 77.9
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.0e-251 873.2 550 76.9
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.0e-251 873.2 558 76.2
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 3.0e-251 871.7 550 77.6
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.2e-251 870.9 558 76.2
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 6.8e-251 870.5 549 77.4
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.2e-250 869.8 558 76.0
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 7.5e-250 867.1 550 77.1
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 7.5e-250 867.1 554 76.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 2.8e-249 865.1 550 78.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 8.3e-249 863.6 556 76.8
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 8.3e-249 863.6 550 76.5
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 8.3e-249 863.6 558 75.8
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.4e-248 862.8 551 77.3
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.4e-248 862.8 550 76.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.8e-248 862.4 558 75.8
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.4e-248 862.1 550 76.9
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 3.1e-248 861.7 556 76.3
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.4e-248 860.9 551 77.1
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 5.4e-248 860.9 556 75.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 9.1e-248 860.1 556 76.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-247 859.8 555 75.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.2e-247 859.8 550 76.7
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.0e-247 859.0 550 76.9
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 2.7e-247 858.6 556 76.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.7e-247 858.6 550 76.9
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.7e-246 855.9 556 75.9
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 3.8e-246 854.7 558 77.1
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 8.6e-246 853.6 554 77.1
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 8.6e-246 853.6 550 75.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.5e-245 852.8 555 76.8
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 4.2e-245 851.3 554 76.5
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 3.6e-244 848.2 550 75.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 6.1e-244 847.4 555 74.8
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.8e-243 845.9 558 74.2
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.3e-243 845.5 550 75.5
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 5.2e-243 844.3 555 74.6
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 6.8e-243 844.0 555 74.6
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.2e-242 843.2 556 72.5
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.2e-242 843.2 550 73.8
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.7e-242 840.9 550 75.6
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 1.4e-240 836.3 556 72.1
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.9e-238 828.2 705 63.1
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 2.0e-234 815.8 558 74.2
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 7.0e-232 807.4 512 77.3
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 9.2e-232 807.0 562 72.4
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.0e-230 802.0 689 62.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 6.4e-225 784.3 509 76.2
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.4e-224 782.3 516 75.0
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 8.6e-222 773.9 580 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 4.7e-220 768.1 560 67.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 6.8e-219 764.2 558 66.8
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.2e-218 763.5 548 68.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.2e-209 732.6 547 64.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.2e-209 732.6 555 69.4
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.5e-207 725.3 555 63.1
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 5.8e-202 708.0 546 61.9
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 8.7e-198 694.1 553 61.1
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.8e-196 689.1 461 74.8
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.7e-191 672.5 424 75.5
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 2.5e-189 666.0 548 60.9
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 3.1e-187 659.1 517 63.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 6.5e-177 624.8 383 78.3
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.4e-168 597.0 515 61.7
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.8e-163 580.1 441 66.9
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 5.0e-153 545.4 733 46.8
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 8.3e-132 474.9 556 48.9
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 5.0e-129 465.7 322 72.4
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 2.1e-119 433.7 332 66.9
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 9.8e-117 424.9 557 45.8
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.2e-100 370.5 432 49.3
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.4e-94 350.5 262 66.0
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.1e-75 288.5 188 73.9
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 5.7e-64 249.6 148 80.4
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.6e-55 221.5 167 64.1
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 2.3e-41 174.5 142 63.4
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.4e-38 164.5 168 50.0
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 3.2e-35 154.1 122 63.9
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 4.2e-35 153.7 94 76.6
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 3.6e-34 150.6 94 77.7
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 5.3e-30 136.7 97 70.1
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.6e-18 98.6 93 60.2
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.8e-14 85.1 66 63.6
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 4.1e-14 84.0 46 82.6
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 7.7e-13 79.7 51 72.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 5.6e-11 73.6 45 75.6
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 3.0e-09 67.8 44 70.5
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 3.0e-09 67.8 44 70.5
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.3e-07 62.4 49 71.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 2.9e-07 61.2 30 86.7
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 8.3e-07 59.7 201 26.4
unitig_699.g19470 Utricularia gibba HOM05D003983 ORTHO05D004562 1.8e-06 58.5 196 25.5
Prupe.1G337100 Prunus persica HOM05D003983 ORTHO05D004562 3.2e-06 57.8 208 24.5
CiPaw.06G059200 Carya illinoinensis HOM05D003983 ORTHO05D004562 4.1e-06 57.4 199 26.6
SEGI_03802 Sequoiadendron giganteum HOM05D001661 ORTHO05D001575 5.4e-06 57.0 224 25.4
ECA233G0760 Erigeron canadensis HOM05D003983 ORTHO05D004562 7.0e-06 56.6 207 26.1
Lalb_Chr07g0187831 Lupinus albus HOM05D003983 ORTHO05D004562 7.0e-06 56.6 211 23.7
SEGI_36481 Sequoiadendron giganteum HOM05D001661 ORTHO05D001575 7.0e-06 56.6 210 26.2
THA.LOC104809791 Tarenaya hassleriana HOM05D003983 ORTHO05D004562 7.0e-06 56.6 205 24.9
Nitab4.5_0002315g0030 Nicotiana tabacum HOM05D003983 ORTHO05D004562 9.2e-06 56.2 206 24.3


User provided reference genes

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