Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1326.2 654 100.0
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1246.1 653 94.8
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 0.0e+00 1206.8 647 92.0
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 0.0e+00 1184.9 649 90.9
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 0.0e+00 1183.7 650 90.8
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 0.0e+00 1183.7 650 90.8
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 0.0e+00 1117.8 607 90.4
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.2e-293 1011.9 658 75.5
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 2.1e-288 995.3 654 75.5
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 9.0e-287 989.9 663 74.5
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.6e-286 988.4 664 74.5
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 5.8e-286 987.3 668 73.7
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 9.9e-286 986.5 670 73.4
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.9e-285 984.9 668 73.5
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 3.8e-285 984.6 643 74.3
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 3.2e-284 981.5 655 74.8
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.2e-284 981.1 674 73.3
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 5.4e-284 980.7 660 74.4
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 7.1e-284 980.3 672 72.6
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 9.3e-284 979.9 661 74.3
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.3e-282 976.1 646 73.7
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.7e-282 975.7 666 73.7
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.0e-282 974.9 662 72.8
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.1e-282 974.2 665 73.4
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.5e-281 971.8 666 73.3
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.3e-281 971.1 684 71.5
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 5.6e-281 970.7 683 71.4
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.3e-280 969.5 601 78.9
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.6e-280 969.1 660 72.6
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.8e-280 968.4 650 73.7
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.1e-279 966.5 665 73.2
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.4e-279 966.1 661 72.0
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.4e-279 965.3 663 72.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 3.1e-279 964.9 683 71.4
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 5.3e-279 964.1 660 72.4
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.2e-278 963.0 643 72.9
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.6e-278 961.8 657 71.7
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.4e-278 961.4 643 72.6
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 4.5e-278 961.1 663 72.7
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 5.8e-278 960.7 659 72.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 5.8e-278 960.7 652 72.7
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 7.6e-278 960.3 660 73.0
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.5e-276 954.1 659 71.0
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 2.1e-275 952.2 658 72.3
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.8e-274 949.1 656 72.0
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 2.3e-274 948.7 660 71.8
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 8.7e-274 946.8 654 72.5
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.5e-273 946.0 605 76.7
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.9e-273 945.7 656 71.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 5.6e-273 944.1 660 71.2
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 7.4e-273 943.7 651 71.3
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 8.1e-272 940.3 666 70.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.8e-271 939.1 650 71.1
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 4.0e-271 937.9 659 71.3
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.5e-270 936.0 650 71.5
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.6e-270 935.3 656 71.0
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.4e-270 934.9 658 70.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 4.5e-270 934.5 654 71.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 5.8e-270 934.1 658 69.8
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.8e-269 931.4 605 76.0
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 3.2e-268 928.3 661 69.1
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 9.3e-268 926.8 658 70.2
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.6e-267 926.0 656 70.1
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.6e-267 926.0 657 70.3
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 2.7e-267 925.2 605 75.9
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 7.9e-267 923.7 603 75.8
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.5e-265 919.5 643 69.8
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 5.7e-265 917.5 598 74.6
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.8e-264 915.2 602 74.6
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 6.3e-264 914.1 650 69.4
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.4e-263 912.9 650 69.7
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 3.1e-263 911.8 653 70.8
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 6.9e-263 910.6 648 69.1
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 6.9e-263 910.6 602 74.4
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 5.9e-262 907.5 637 70.2
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.0e-261 906.7 648 69.6
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 1.1e-260 903.3 648 69.1
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 3.2e-260 901.7 604 71.9
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.2e-260 901.4 650 67.7
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 1.6e-259 899.4 597 73.5
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 2.3e-258 895.6 644 67.9
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.6e-256 889.4 653 68.0
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 3.7e-256 888.3 653 68.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 3.7e-256 888.3 656 67.7
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.1e-255 886.7 650 67.8
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 2.6e-254 882.1 652 66.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 3.4e-254 881.7 604 71.9
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 3.8e-253 878.2 653 67.2
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 4.2e-252 874.8 654 67.0
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.1e-247 858.6 652 66.7
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 5.9e-246 854.4 646 65.9
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 5.5e-244 847.8 528 78.2
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.3e-242 842.4 647 66.3
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.5e-241 839.7 726 60.1
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 9.4e-236 820.5 624 66.0
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 3.5e-222 775.4 517 72.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.3e-221 773.5 658 60.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 8.5e-221 770.8 652 62.9
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 7.2e-220 767.7 733 54.7
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 4.9e-216 755.0 749 52.6
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.4e-215 751.5 760 50.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.4e-207 726.9 842 46.0
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 3.2e-207 725.7 658 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 4.6e-206 721.8 823 47.4
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 1.2e-201 707.2 611 59.2
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.1e-199 700.7 457 74.8
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.6e-190 670.2 453 71.7
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 4.3e-188 662.1 646 52.0
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.4e-169 599.4 425 70.6
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 7.4e-164 581.6 536 57.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.2e-161 574.3 547 53.7
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.9e-146 521.9 420 63.6
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 4.1e-122 443.0 303 71.6
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 5.2e-117 426.0 390 57.4
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.5e-111 407.1 262 76.3
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.8e-107 393.7 334 59.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.9e-96 357.1 245 69.4
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 8.9e-93 345.5 215 74.9
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.1e-87 328.6 337 51.0
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.0e-84 317.8 542 39.9
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.1e-61 240.7 151 72.8
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 7.9e-41 172.9 436 30.0
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.3e-40 171.4 131 62.6
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.5e-36 158.7 140 60.7
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.5e-10 71.6 49 67.3
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 3.2e-10 71.2 64 56.2
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 4.2e-10 70.9 55 63.6
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 9.4e-10 69.7 57 66.7
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.6e-09 67.8 165 30.3
Nitab4.5_0007002g0010 Nicotiana tabacum HOM05D011687 ORTHO05D014163 1.1e-07 62.8 112 42.0
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 5.7e-07 60.5 44 65.9
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.2e-06 58.5 48 64.6


User provided reference genes

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