Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 0.0e+00 1222.6 731 100.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.2e-289 996.9 749 77.7
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.8e-275 952.6 719 75.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 4.4e-274 948.0 718 76.0
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 5.9e-271 937.6 719 75.7
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.2e-265 919.1 719 73.0
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.8e-265 917.9 724 72.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.3e-265 917.1 724 72.1
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 5.4e-264 914.4 718 71.7
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 6.8e-259 897.5 720 69.9
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 4.4e-258 894.8 720 70.1
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.6e-255 886.3 718 69.9
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.0e-255 885.9 719 69.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 2.3e-254 882.5 721 69.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 3.8e-254 881.7 717 70.0
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.9e-253 879.4 718 69.4
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.5e-253 879.0 719 69.1
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.3e-253 878.6 719 69.7
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.3e-253 878.2 717 69.6
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.6e-253 877.9 718 69.4
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 9.5e-253 877.1 719 69.3
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.1e-252 875.9 719 69.0
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 2.8e-252 875.5 717 68.9
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 3.6e-252 875.2 719 68.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.7e-252 874.8 719 69.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.4e-251 873.2 718 69.1
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.0e-251 872.1 780 65.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 4.0e-251 871.7 719 68.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 4.0e-251 871.7 721 67.8
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 5.2e-251 871.3 717 68.9
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 6.8e-251 870.9 780 65.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.4e-250 868.2 725 67.6
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.5e-250 867.5 723 67.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 9.8e-250 867.1 724 67.3
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.7e-249 866.3 719 69.0
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.9e-249 864.8 724 67.0
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 6.4e-249 864.4 724 67.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.8e-248 862.8 719 68.3
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.8e-248 862.8 719 69.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 4.6e-247 858.2 728 66.9
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.3e-246 855.9 721 68.1
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 3.0e-246 855.5 728 66.6
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 3.9e-246 855.1 719 67.9
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.9e-246 855.1 719 67.9
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.0e-246 854.7 734 65.9
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.1e-245 853.6 724 66.7
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 7.3e-245 850.9 726 66.4
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 9.5e-245 850.5 719 68.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.2e-244 850.1 719 69.0
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 8.0e-244 847.4 719 67.5
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.3e-243 845.9 724 67.3
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 5.2e-243 844.7 722 67.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 6.8e-243 844.3 719 66.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.5e-242 843.2 719 66.9
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.0e-242 842.8 698 67.5
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 3.4e-242 842.0 717 66.9
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 5.8e-242 841.3 720 66.8
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 9.8e-242 840.5 719 66.5
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 2.2e-241 839.3 724 66.9
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 2.9e-241 839.0 698 67.5
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 6.4e-241 837.8 721 67.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.9e-240 836.3 719 65.6
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 7.0e-240 834.3 719 67.3
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.6e-239 833.2 699 67.8
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.6e-239 833.2 721 65.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-239 832.4 719 67.5
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 3.5e-239 832.0 719 66.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.6e-239 831.6 719 67.2
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 6.0e-239 831.2 719 66.8
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 6.0e-239 831.2 719 66.8
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.0e-239 831.2 719 65.5
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 6.0e-239 831.2 724 66.4
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.3e-238 830.1 722 66.3
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-238 829.7 719 65.4
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.7e-238 829.7 719 66.5
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.7e-238 829.7 719 65.5
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.3e-238 829.3 721 65.3
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.0e-238 828.2 719 67.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.9e-237 826.2 719 68.2
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 4.3e-237 825.1 719 66.3
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 5.6e-237 824.7 719 66.3
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 9.5e-237 823.9 717 66.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 4.0e-235 818.5 723 66.8
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 6.8e-235 817.8 724 65.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-234 817.0 719 65.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 5.8e-234 814.7 719 65.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 5.8e-234 814.7 720 66.0
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.4e-232 810.1 735 66.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 5.4e-232 808.1 720 64.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.1e-232 807.7 768 63.0
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 6.6e-230 801.2 719 64.7
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 6.6e-230 801.2 719 64.7
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.8e-228 795.8 719 63.7
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.8e-228 795.8 716 62.8
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 3.5e-223 778.9 719 64.0
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 6.0e-223 778.1 670 66.4
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.9e-222 775.4 728 62.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.1e-221 773.9 721 64.1
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.1e-216 757.3 717 62.2
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.2e-216 755.4 718 61.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.7e-215 752.7 1037 48.0
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.1e-213 747.3 723 61.3
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.5e-213 746.1 723 61.4
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.3e-213 745.7 719 61.8
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 5.6e-213 745.0 721 60.6
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.8e-212 741.9 683 62.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.4e-210 735.7 608 69.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 9.9e-210 734.2 721 61.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 3.8e-209 732.3 650 65.8
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.9e-206 722.2 715 58.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 2.1e-204 716.5 704 59.8
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.6e-204 715.7 711 59.2
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 5.8e-202 708.4 731 60.9
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 4.6e-183 645.6 711 54.0
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.6e-180 637.1 704 54.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 6.3e-180 635.2 697 55.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.3e-174 616.7 702 53.3
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.0e-173 613.6 584 61.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 6.8e-150 535.4 720 47.2
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.4e-147 526.9 394 72.6
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 7.0e-147 525.4 429 73.7
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.7e-127 459.5 369 65.6
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 4.6e-122 443.0 376 72.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.3e-120 436.4 406 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.1e-99 368.6 620 41.3
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.7e-68 265.0 512 39.6
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 9.3e-67 259.2 281 58.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.8e-65 255.0 757 29.2
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.9e-64 251.5 519 38.5
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 7.4e-48 196.4 308 44.5
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 6.3e-47 193.4 185 60.5
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 2.1e-42 178.3 101 91.1
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.7e-39 167.5 94 90.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.3e-36 159.1 107 77.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.3e-36 159.1 97 83.5
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.0e-32 145.2 604 27.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.9e-28 131.3 93 80.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.4e-22 111.7 71 85.9
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.7e-21 108.2 663 24.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.5e-16 90.1 704 20.7
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 3.9e-12 77.8 43 83.7
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 6.2e-10 70.5 581 21.7
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 5.2e-09 67.4 683 18.9
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.4e-06 57.4 28 92.9


User provided reference genes

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