Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.5e-59 232.6 117 100.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 4.8e-50 201.1 113 85.0
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 8.2e-50 200.3 114 85.1
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.2e-44 181.0 91 97.8
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.0e-35 152.5 100 80.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 9.5e-30 133.7 89 77.5
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 5.2e-28 127.9 90 65.6
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 8.9e-28 127.1 105 61.9
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 8.9e-28 127.1 87 72.4
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.6e-27 125.6 99 60.6
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 3.4e-27 125.2 87 65.5
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.8e-27 124.4 106 63.2
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.5e-27 124.0 106 63.2
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 7.5e-27 124.0 87 71.3
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.7e-26 121.7 89 69.7
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.4e-26 120.9 91 67.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 6.4e-26 120.9 75 74.7
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.1e-25 120.2 77 75.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.6e-24 116.3 102 59.8
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.0e-24 115.9 102 62.7
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.6e-24 114.8 112 57.1
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 6.0e-24 114.4 74 74.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-23 113.6 109 57.8
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-23 113.6 109 57.8
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.0e-23 113.6 85 69.4
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.3e-23 112.5 81 66.7
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 3.9e-23 111.7 99 61.6
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 6.6e-23 110.9 74 74.3
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 6.6e-23 110.9 114 54.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.1e-22 110.2 112 57.1
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.5e-22 109.8 100 58.0
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.5e-22 109.8 100 58.0
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.5e-22 109.8 100 58.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.5e-22 109.0 117 54.7
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 7.3e-22 107.5 80 66.2
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.3e-22 107.5 97 60.8
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-21 106.7 74 71.6
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.6e-21 106.3 87 59.8
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.1e-21 105.9 88 62.5
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 2.8e-21 105.5 68 73.5
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.6e-21 105.1 89 59.6
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.7e-21 104.8 72 69.4
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 6.2e-21 104.4 104 53.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 8.0e-21 104.0 89 56.2
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.1e-20 103.6 96 58.3
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.1e-20 103.6 96 58.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.1e-20 103.6 98 57.1
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.4e-20 103.2 90 58.9
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.8e-20 102.8 74 63.5
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 3.1e-20 102.1 84 60.7
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.1e-20 102.1 86 57.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 4.0e-20 101.7 89 57.3
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 4.0e-20 101.7 80 65.0
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.0e-20 101.7 76 60.5
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.5e-19 99.8 81 60.5
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.5e-19 99.8 103 57.3
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.0e-19 99.4 83 62.7
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-19 99.4 90 53.3
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.6e-19 99.0 80 57.5
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 3.4e-19 98.6 90 57.8
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.4e-19 98.6 86 54.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 3.4e-19 98.6 86 54.7
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 4.4e-19 98.2 105 49.5
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 5.8e-19 97.8 79 57.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 9.8e-19 97.1 84 54.8
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.3e-18 96.7 79 57.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.7e-18 96.3 73 61.6
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.2e-18 95.9 71 64.8
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.9e-18 95.5 79 55.7
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.7e-18 95.1 82 56.1
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 3.7e-18 95.1 77 54.5
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.4e-18 94.4 82 54.9
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 8.3e-18 94.0 89 51.7
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-17 93.6 75 57.3
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.1e-17 93.6 79 59.5
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.1e-17 93.6 82 54.9
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.9e-17 92.8 68 63.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.9e-17 92.8 78 53.8
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.4e-17 92.4 72 55.6
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 4.1e-17 91.7 73 60.3
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 5.4e-17 91.3 83 53.0
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 5.4e-17 91.3 83 53.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 5.4e-17 91.3 83 53.0
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 5.4e-17 91.3 78 59.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 7.0e-17 90.9 81 55.6
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 7.0e-17 90.9 70 62.9
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 7.0e-17 90.9 88 48.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 9.2e-17 90.5 76 57.9
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.2e-16 90.1 75 52.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-16 90.1 78 55.1
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.2e-16 90.1 73 53.4
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.6e-16 89.7 82 48.8
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.6e-16 89.7 75 52.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.6e-16 89.7 82 48.8
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.6e-16 89.7 81 53.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 2.1e-16 89.4 88 51.1
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-16 89.0 93 49.5
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 3.5e-16 88.6 75 52.0
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 3.5e-16 88.6 86 47.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 6.0e-16 87.8 79 53.2
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.0e-16 87.8 78 53.8
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.0e-15 87.0 83 50.6
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.3e-15 86.7 76 52.6
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 1.3e-15 86.7 83 49.4
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.3e-15 86.7 71 56.3
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.7e-15 86.3 77 53.2
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.7e-15 86.3 77 53.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.3e-15 85.9 85 45.9
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 3.0e-15 85.5 78 46.2
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.0e-15 85.5 79 51.9
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 5.1e-15 84.7 79 46.8
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 5.1e-15 84.7 71 56.3
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 8.6e-15 84.0 85 48.2
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.9e-14 82.8 74 50.0
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 5.6e-14 81.3 79 49.4
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-13 79.3 67 53.7
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 8.1e-13 77.4 71 52.1
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.4e-12 76.6 67 52.2
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.5e-11 73.2 71 50.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 3.4e-11 72.0 60 60.0
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 5.8e-11 71.2 91 48.4
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 1.9e-09 66.2 61 52.5
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.4e-09 64.7 43 74.4
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.6e-08 63.2 57 56.1
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.1e-08 62.8 55 56.4
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.6e-08 61.6 55 63.6
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 6.6e-07 57.8 101 35.6
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 8.6e-07 57.4 44 59.1
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 3.3e-06 55.5 74 40.5
Dinv38338 Davidia involucrata HOM05D000039 ORTHO05D000366 9.5e-06 53.9 86 30.2


User provided reference genes

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