Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 8.0e-261 903.3 472 100.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 3.7e-218 761.5 562 75.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.7e-215 752.7 566 74.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 3.3e-214 748.4 566 73.9
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.2e-213 746.5 566 73.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 7.3e-206 720.7 396 96.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 7.3e-198 694.1 396 90.7
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.1e-197 692.6 397 90.7
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.6e-197 691.8 396 90.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.2e-197 691.0 396 90.9
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.1e-196 690.3 396 90.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.8e-196 689.5 396 91.2
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.0e-196 688.3 396 90.4
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 6.9e-196 687.6 396 90.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 9.0e-196 687.2 396 90.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.5e-195 686.4 396 89.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.0e-195 686.0 396 89.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.6e-195 685.6 400 89.2
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.6e-195 685.6 396 89.6
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.4e-195 685.3 397 89.7
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.5e-195 684.9 400 89.5
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.8e-195 684.5 396 89.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 5.8e-195 684.5 396 90.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 9.9e-195 683.7 396 89.6
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.3e-194 683.3 396 89.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.3e-194 683.3 396 89.1
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.2e-194 682.6 397 89.2
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.9e-194 682.2 396 89.4
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 3.8e-194 681.8 396 89.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 6.4e-194 681.0 396 90.2
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.4e-194 681.0 396 89.4
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 8.4e-194 680.6 396 89.4
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 8.4e-194 680.6 395 89.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 8.4e-194 680.6 396 89.1
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 8.4e-194 680.6 397 89.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.1e-193 680.2 396 89.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.4e-193 679.1 392 89.3
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.2e-193 678.7 396 88.4
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.2e-193 678.3 396 88.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 5.4e-193 677.9 396 88.4
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.1e-193 677.6 396 88.4
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 7.1e-193 677.6 397 88.7
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.3e-193 677.2 396 88.9
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 9.3e-193 677.2 394 88.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 9.3e-193 677.2 396 87.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 9.3e-193 677.2 396 88.6
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.1e-192 676.0 396 88.4
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-192 675.2 396 88.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.0e-192 674.5 396 89.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 6.0e-192 674.5 396 88.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 6.0e-192 674.5 396 88.4
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 6.0e-192 674.5 414 86.5
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 7.9e-192 674.1 396 89.1
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 7.9e-192 674.1 394 88.3
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-191 673.7 396 88.1
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.0e-191 673.7 396 88.1
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.0e-191 673.7 396 88.1
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.0e-191 673.7 396 88.1
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 1.0e-191 673.7 396 87.9
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.3e-191 673.3 394 86.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.8e-191 672.9 394 86.5
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.8e-191 672.9 396 88.9
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 3.0e-191 672.2 396 88.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.9e-191 671.8 396 88.1
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.9e-191 671.8 389 89.2
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 5.1e-191 671.4 396 86.6
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 5.1e-191 671.4 396 88.1
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 8.7e-191 670.6 394 86.3
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-190 669.5 396 87.9
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.5e-190 669.1 396 88.1
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 5.6e-190 667.9 396 87.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.4e-190 667.5 396 87.4
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.4e-190 667.5 396 87.1
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 7.4e-190 667.5 392 87.2
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 9.6e-190 667.2 396 88.1
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.3e-189 666.8 396 87.6
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.6e-189 666.4 396 87.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.7e-189 665.2 396 86.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.7e-189 665.2 396 86.9
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 4.8e-189 664.8 396 87.1
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 4.8e-189 664.8 396 87.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 6.2e-189 664.5 397 87.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.2e-189 664.5 396 87.1
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-188 663.7 395 86.6
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 6.9e-188 661.0 396 86.6
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 9.0e-188 660.6 396 86.9
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 9.0e-188 660.6 422 83.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.2e-187 660.2 418 83.0
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.5e-187 659.8 396 86.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.5e-187 659.8 394 85.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.0e-187 659.4 407 85.7
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.7e-186 656.4 392 87.5
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.9e-186 655.6 374 91.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.9e-186 654.8 395 85.3
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.4e-185 653.3 396 85.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 4.2e-185 651.7 392 87.2
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 7.1e-185 651.0 396 87.6
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 9.3e-185 650.6 391 86.4
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 3.5e-184 648.7 397 84.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 5.1e-183 644.8 435 79.8
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 8.2e-181 637.5 397 83.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.3e-180 634.8 382 86.6
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 6.9e-180 634.4 381 85.8
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.2e-179 633.6 356 91.9
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.0e-179 632.9 390 84.4
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.9e-177 626.3 358 91.1
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.9e-177 626.3 392 82.4
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 7.9e-176 620.9 361 89.8
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 5.7e-174 614.8 396 80.1
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.8e-173 612.5 381 84.3
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.0e-171 606.3 394 79.9
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 5.1e-167 591.7 357 84.9
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.4e-163 578.9 341 89.1
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.7e-162 576.6 377 78.8
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 8.5e-162 574.3 381 77.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.9e-161 573.2 388 77.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.5e-161 572.8 396 74.5
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 5.5e-161 571.6 392 75.8
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.6e-160 570.1 380 76.6
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 2.7e-160 569.3 391 75.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 9.1e-156 554.3 555 59.6
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.2e-154 549.7 396 71.5
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.2e-153 545.8 374 74.1
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-150 536.6 317 87.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 7.0e-148 528.1 445 68.1
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 7.0e-140 501.5 305 85.6
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.5e-137 493.0 260 99.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 5.2e-135 485.3 355 71.0
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 7.5e-126 454.9 266 89.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.7e-125 452.6 270 85.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 6.6e-122 441.8 366 68.3
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 3.6e-120 436.0 286 80.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-113 414.5 396 60.6
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.3e-113 412.9 257 82.5
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.4e-108 396.7 396 60.6
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.4e-108 395.6 415 52.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.6e-94 348.6 206 89.8
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.5e-89 334.3 201 87.6
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.1e-79 300.1 294 61.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 6.9e-79 298.9 185 80.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.8e-69 266.5 156 90.4
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 7.1e-60 235.7 142 84.5
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.7e-56 223.4 232 57.3
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-49 201.8 130 77.7
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.7e-48 198.0 126 79.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 6.3e-48 196.1 157 66.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 4.1e-39 166.8 149 59.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.3e-33 147.1 94 74.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 4.5e-30 136.7 101 77.2
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 8.3e-24 115.9 90 61.1
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.5e-20 105.1 70 78.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 9.4e-20 102.4 57 89.5
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 2.7e-19 100.9 64 81.2
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.8e-18 96.3 60 81.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 8.8e-18 95.9 66 77.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.7e-16 91.7 59 79.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.4e-15 87.8 53 84.9
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 3.3e-12 77.4 142 35.9
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 5.7e-09 66.6 107 43.9
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 9.2e-07 59.3 38 78.9


User provided reference genes

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