Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.9e-147 525.8 259 100.0
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 9.9e-104 380.6 201 94.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.4e-94 350.1 201 86.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 5.4e-94 348.2 201 85.1
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 6.9e-89 331.3 201 83.6
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 6.9e-89 331.3 201 83.6
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 3.3e-59 232.6 206 56.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.9e-54 216.9 202 55.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.5e-54 216.5 206 55.3
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 3.2e-54 216.1 202 55.4
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.6e-53 212.6 169 66.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.9e-53 211.5 206 52.9
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 8.8e-52 208.0 207 52.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.1e-51 207.6 203 53.2
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.5e-51 206.5 260 46.9
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 4.3e-51 205.7 199 53.8
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.7e-50 203.8 203 54.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-50 203.8 206 53.9
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-50 203.4 204 55.9
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-50 203.4 204 55.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 8.2e-50 201.4 203 53.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.8e-49 200.3 202 54.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.1e-49 199.5 203 50.7
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.1e-49 199.5 201 52.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.9e-49 198.4 205 49.8
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 9.1e-49 198.0 203 52.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.2e-48 197.6 201 53.2
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.0e-48 196.8 211 51.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.6e-48 196.4 246 43.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 5.9e-48 195.3 212 50.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.0e-47 194.5 209 51.7
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.0e-47 194.5 208 50.0
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.3e-47 194.1 206 51.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.7e-47 193.7 201 50.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-47 193.7 235 47.2
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.2e-47 193.4 198 49.5
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.9e-47 193.0 241 46.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 3.8e-47 192.6 199 54.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 3.8e-47 192.6 208 51.0
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 5.0e-47 192.2 198 55.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.5e-47 191.8 207 50.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.5e-47 191.8 207 50.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.5e-47 191.4 199 53.3
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-46 191.0 199 47.7
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.1e-46 191.0 201 54.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.4e-46 190.7 203 52.7
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.9e-46 190.3 200 52.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 2.5e-46 189.9 208 51.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 3.2e-46 189.5 204 50.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.2e-46 189.5 203 51.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.5e-46 188.7 207 50.2
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 7.2e-46 188.3 200 51.5
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 7.2e-46 188.3 201 51.2
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 9.4e-46 188.0 198 49.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.4e-46 188.0 203 48.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 9.4e-46 188.0 201 51.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 9.4e-46 188.0 202 52.0
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.1e-45 186.8 218 48.6
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.1e-45 186.8 197 51.8
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.6e-45 186.0 215 49.8
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.6e-45 186.0 204 50.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 7.9e-45 184.9 199 48.7
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 7.9e-45 184.9 199 48.7
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.9e-45 184.9 206 50.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.9e-45 184.9 214 49.1
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.0e-44 184.5 203 47.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.4e-44 184.1 204 50.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.4e-44 184.1 204 49.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.8e-44 183.7 204 50.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 2.3e-44 183.3 203 49.3
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.3e-44 183.3 202 47.5
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.3e-44 183.3 211 48.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 3.9e-44 182.6 198 50.0
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 3.9e-44 182.6 198 50.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 6.7e-44 181.8 202 49.5
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 6.7e-44 181.8 201 50.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.1e-43 181.0 203 48.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.5e-43 180.6 203 48.3
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.0e-43 180.3 201 50.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.6e-43 179.9 198 49.5
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.6e-43 179.9 200 48.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-43 179.5 201 49.3
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.3e-43 179.5 201 48.8
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.7e-43 178.7 203 50.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.7e-43 178.7 215 49.3
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 7.4e-43 178.3 207 45.9
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 9.7e-43 177.9 215 47.4
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.7e-43 177.9 203 48.3
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.3e-42 177.6 191 50.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.2e-42 176.8 205 47.8
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.8e-42 176.4 229 42.4
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.8e-42 176.4 174 54.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.8e-42 175.6 203 49.3
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.3e-42 175.3 203 47.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 6.3e-42 175.3 202 49.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 6.3e-42 175.3 224 46.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 6.3e-42 175.3 198 44.4
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.4e-41 174.1 203 47.3
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.4e-41 174.1 274 39.8
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-41 173.7 194 53.1
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.8e-41 173.7 197 48.2
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.1e-41 172.9 205 45.4
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.1e-41 172.9 209 47.4
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.1e-41 172.6 204 49.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.1e-41 172.6 209 47.4
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.1e-41 172.6 205 49.8
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.3e-41 172.2 203 46.8
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.0e-41 171.8 201 47.3
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.2e-40 171.0 208 47.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 3.5e-40 169.5 197 50.3
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 4.5e-40 169.1 203 48.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 4.5e-40 169.1 203 48.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 4.5e-40 169.1 203 48.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.9e-40 168.7 229 41.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.7e-40 168.3 188 51.6
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.0e-39 167.9 205 46.8
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.7e-39 167.2 200 49.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.7e-39 167.2 200 49.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.7e-39 167.2 201 47.8
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.5e-39 164.9 204 47.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 8.5e-39 164.9 157 56.7
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.1e-38 164.5 198 47.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.5e-38 163.3 198 47.5
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.2e-38 162.9 202 45.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.2e-38 162.5 209 46.4
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-37 161.0 200 45.5
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.2e-37 161.0 200 45.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.0e-36 157.9 202 45.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.8e-36 154.8 198 45.5
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.2e-34 150.2 198 46.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 3.7e-34 149.4 202 41.1
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.2e-34 148.3 92 75.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.1e-33 147.9 153 51.6
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.8e-33 147.1 198 46.5
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-33 146.4 198 44.4
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.1e-33 146.4 205 43.4
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 9.1e-33 144.8 133 59.4
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.6e-32 144.1 203 43.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.6e-32 143.3 205 42.0
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.0e-31 141.4 147 52.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.1e-30 137.9 201 41.8
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.9e-30 137.1 180 43.9
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 7.2e-30 135.2 334 32.9
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 6.8e-28 128.6 149 47.7
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 7.5e-27 125.2 112 55.4
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 9.7e-27 124.8 152 45.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 9.7e-27 124.8 126 54.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.3e-26 124.4 106 55.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.7e-26 122.9 203 40.9
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.3e-26 122.1 134 50.0
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.1e-25 121.3 130 48.5
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 5.3e-25 119.0 167 42.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.2e-24 117.9 159 44.0
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.5e-24 116.3 165 43.6
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.5e-22 110.2 153 40.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 7.2e-22 108.6 130 47.7
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.4e-17 93.6 124 40.3
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 5.4e-17 92.4 153 39.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-13 81.3 73 56.2
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.6e-13 79.7 197 35.0
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.3e-10 71.2 153 33.3
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.7e-10 70.9 56 57.1
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.8e-10 70.1 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.8e-10 70.1 44 75.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.4e-09 67.8 56 62.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.4e-09 67.8 44 72.7
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.8e-09 67.4 117 33.3
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.0e-09 65.5 117 35.0
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.3e-06 56.6 99 34.3


User provided reference genes

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