Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.5e-264 915.6 443 100.0
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.7e-253 877.1 444 95.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.3e-236 822.8 444 89.2
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.1e-224 783.1 444 85.4
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 8.9e-222 773.5 444 83.3
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.0e-221 772.3 444 83.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 2.9e-220 768.5 444 82.7
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 9.0e-198 693.7 444 72.3
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 3.0e-193 678.7 444 72.1
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 6.9e-190 667.5 444 70.9
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.9e-188 662.1 456 70.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.1e-187 660.2 443 70.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 5.5e-187 657.9 428 73.1
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 3.7e-183 645.2 443 67.7
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.1e-182 641.7 444 68.0
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.2e-181 640.2 444 68.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.4e-181 638.6 444 68.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.2e-180 636.0 444 67.8
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.2e-179 632.1 444 68.7
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.8e-177 626.3 442 68.3
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 5.1e-177 624.8 444 66.7
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 6.7e-177 624.4 444 67.1
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.2e-175 619.4 444 67.3
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.1e-174 617.1 444 67.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-174 616.3 442 66.1
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.9e-174 614.4 444 65.3
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.2e-173 613.6 477 62.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 7.7e-173 610.9 446 63.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.8e-172 608.6 444 66.7
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 5.0e-172 608.2 444 64.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 8.5e-172 607.4 444 64.4
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.5e-171 604.7 444 63.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 3.6e-170 602.1 444 63.7
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 4.7e-170 601.7 444 65.8
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.7e-170 601.7 444 66.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.0e-169 600.5 442 64.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.9e-169 598.6 444 64.4
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.5e-168 596.7 445 64.3
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.0e-168 596.3 444 63.3
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.6e-168 595.9 444 64.4
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 9.7e-168 594.0 444 62.4
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.3e-167 593.6 442 63.1
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.7e-167 593.2 418 67.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.2e-167 592.8 445 64.3
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 6.3e-167 591.3 443 63.0
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-166 590.5 443 62.8
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.4e-166 590.1 442 62.7
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.1e-166 589.0 445 65.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.1e-166 588.6 446 63.5
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 7.0e-166 587.8 444 63.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 9.1e-166 587.4 446 61.9
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.0e-165 586.3 444 64.2
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 7.7e-165 584.3 444 61.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.0e-164 583.9 445 63.6
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.0e-164 583.9 489 58.9
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.7e-164 583.2 445 63.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.4e-163 580.1 443 62.1
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.2e-163 578.6 365 74.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 5.5e-163 578.2 447 61.3
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.6e-162 576.6 445 62.7
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 6.1e-162 574.7 442 62.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.4e-161 573.5 444 62.2
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.3e-161 572.8 444 62.6
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 6.7e-161 571.2 446 61.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 8.8e-161 570.9 444 61.3
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 2.6e-160 569.3 444 60.8
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 3.7e-159 565.5 445 60.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.4e-158 562.8 444 60.8
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 4.1e-158 562.0 447 61.1
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.7e-157 557.8 442 61.1
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.3e-156 557.0 446 60.3
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 8.5e-156 554.3 444 60.1
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.1e-154 549.7 420 62.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.7e-154 549.3 442 60.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 4.0e-153 545.4 365 72.1
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.8e-153 544.3 441 61.5
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.2e-152 543.9 443 58.5
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 7.5e-152 541.2 444 59.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 7.5e-152 541.2 439 62.4
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 8.3e-151 537.7 444 59.9
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 8.3e-151 537.7 444 59.9
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.4e-150 537.0 459 58.2
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.4e-150 536.2 444 59.2
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-150 536.2 444 61.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 7.0e-150 534.6 383 67.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.2e-149 533.9 443 57.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.7e-149 532.7 445 59.1
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.7e-149 532.7 445 59.1
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 5.0e-148 528.5 419 61.8
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.5e-148 528.1 382 66.2
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.2e-146 523.9 387 63.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 5.2e-145 518.5 399 60.2
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 7.7e-141 504.6 444 54.7
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.3e-140 503.1 381 61.7
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.6e-140 501.5 363 67.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.1e-138 496.5 314 74.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 4.7e-138 495.4 442 55.9
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.1e-138 495.0 444 56.1
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.7e-135 486.9 445 52.1
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.2e-135 486.5 382 60.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 6.3e-135 485.0 446 55.8
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.3e-132 477.2 445 55.5
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.9e-127 458.8 417 55.6
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.1e-126 457.6 463 51.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 3.2e-126 456.1 445 53.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 3.2e-126 456.1 445 53.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 3.2e-126 456.1 445 53.0
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.6e-125 452.2 444 53.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.4e-121 440.7 458 50.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 6.4e-119 431.8 445 50.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 7.8e-117 424.9 436 51.4
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.6e-114 417.2 448 49.8
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.3e-113 413.3 308 65.9
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.7e-109 399.8 308 63.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 3.6e-98 362.8 446 46.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.1e-97 361.3 444 44.1
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-95 353.6 245 67.8
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.1e-94 348.6 367 52.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.6e-93 345.9 439 42.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.0e-92 344.7 426 42.7
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 3.9e-92 342.8 442 42.1
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 6.6e-92 342.0 230 70.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.1e-91 341.3 436 42.4
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.5e-88 330.9 382 46.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.9e-87 325.9 445 42.0
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 4.6e-85 319.3 446 43.7
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.0e-79 301.6 312 50.6
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.4e-78 297.7 232 62.9
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-67 261.5 184 67.9
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.1e-59 235.0 515 34.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.7e-59 232.6 484 32.6
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 5.1e-52 209.5 148 62.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 3.1e-49 200.3 144 66.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.5e-38 164.9 497 29.4
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.4e-33 148.3 137 54.0
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-32 144.4 102 63.7
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 6.1e-29 132.9 93 67.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.6e-24 118.2 99 58.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.2e-21 108.6 72 68.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 9.5e-14 82.4 68 54.4
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.1e-09 68.9 142 31.7
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.9e-09 68.2 69 47.8
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 3.2e-09 67.4 156 34.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.2e-08 65.5 109 34.9
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.9e-06 58.2 134 32.1
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.9e-06 58.2 115 31.3
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 2.5e-06 57.8 136 32.4
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 2.5e-06 57.8 134 30.6
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 3.3e-06 57.4 134 30.6
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.3e-06 57.0 134 32.1
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 4.3e-06 57.0 136 32.4
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 9.5e-06 55.8 136 30.9
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 9.5e-06 55.8 136 30.9


User provided reference genes

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