Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 8.2e-123 443.7 225 100.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.1e-122 441.8 225 99.6
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.2e-116 423.3 224 95.1
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.2e-116 423.3 224 95.1
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.4e-116 421.8 224 94.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 5.4e-114 414.5 224 92.4
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 5.2e-101 371.3 224 80.8
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.4e-100 368.6 224 81.2
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.9e-99 365.5 214 84.6
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 2.4e-98 362.5 224 79.0
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 7.0e-98 360.9 222 78.8
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 9.2e-98 360.5 225 80.0
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.7e-97 359.0 223 78.5
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.7e-97 359.0 224 76.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 7.8e-97 357.5 222 78.4
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 223 78.5
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.7e-96 356.3 225 78.7
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.3e-96 355.9 224 75.4
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.0e-96 354.8 222 77.0
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 6.6e-96 354.4 216 80.1
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-95 353.6 223 77.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.3e-95 352.1 225 75.6
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 3.3e-95 352.1 225 76.0
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.3e-95 351.7 222 77.9
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.6e-94 349.7 218 78.9
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.6e-94 349.7 225 77.8
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.6e-94 349.7 225 77.3
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.6e-94 349.7 225 78.2
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.8e-94 349.0 225 76.0
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 6.2e-94 347.8 223 75.3
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.2e-94 347.8 224 76.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 6.2e-94 347.8 223 77.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 8.0e-94 347.4 224 75.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.0e-93 347.1 209 80.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-93 345.9 224 75.4
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 3.1e-93 345.5 213 80.8
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 5.2e-93 344.7 223 74.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.8e-93 344.4 224 75.9
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 6.8e-93 344.4 223 76.7
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.8e-93 344.4 224 75.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 8.9e-93 344.0 225 76.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 8.9e-93 344.0 218 76.6
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.5e-92 343.2 237 73.0
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.5e-92 343.2 229 72.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.0e-92 342.8 225 75.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.0e-92 342.8 225 76.9
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.0e-92 342.8 218 77.1
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.0e-92 342.8 227 74.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.6e-92 342.4 225 73.8
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.4e-92 342.0 204 81.4
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 4.4e-92 341.7 225 75.1
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.8e-92 341.3 223 73.5
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.8e-92 341.3 223 74.4
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 7.5e-92 340.9 223 72.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 9.8e-92 340.5 221 75.1
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 9.8e-92 340.5 225 74.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.3e-91 340.1 219 75.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 75.6
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 74.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 76.1
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.7e-91 339.7 218 76.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.2e-91 339.3 225 74.7
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 2.2e-91 339.3 207 79.2
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 2.2e-91 339.3 220 76.8
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.7e-91 338.6 225 74.7
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.9e-91 338.2 225 74.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 4.9e-91 338.2 221 73.8
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 4.9e-91 338.2 226 73.9
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.9e-91 338.2 229 72.9
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.4e-91 337.8 222 73.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.4e-91 337.8 225 73.8
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.3e-91 337.4 226 73.5
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.1e-90 337.0 228 72.8
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-90 337.0 220 74.1
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.9e-90 336.3 222 73.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-90 336.3 221 73.8
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-90 335.9 221 73.8
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.4e-90 335.9 213 77.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.4e-90 335.9 225 73.8
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 3.2e-90 335.5 213 76.5
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 7.0e-90 334.3 220 74.5
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 9.2e-90 334.0 221 73.3
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-89 333.6 226 72.6
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.0e-89 332.8 224 72.8
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 2.7e-89 332.4 217 75.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.7e-89 332.4 217 73.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 2.7e-89 332.4 225 72.9
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.5e-89 332.0 225 72.4
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 3.5e-89 332.0 222 73.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 3.5e-89 332.0 222 73.0
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.8e-89 330.9 226 72.6
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 7.8e-89 330.9 225 71.1
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.3e-88 330.1 217 73.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.3e-88 330.1 220 74.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.5e-87 326.6 218 72.9
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.5e-87 325.9 212 72.6
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.5e-87 325.9 202 79.7
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.2e-86 323.6 218 70.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.1e-86 322.8 224 75.0
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 3.6e-86 322.0 217 70.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.6e-86 322.0 225 73.3
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 4.7e-86 321.6 224 71.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 8.1e-86 320.9 206 74.3
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 8.1e-86 320.9 217 70.5
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.1e-85 320.5 217 70.0
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.3e-85 319.3 205 75.6
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.3e-85 319.3 201 77.6
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 5.2e-85 318.2 202 75.2
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 6.8e-85 317.8 200 77.5
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.8e-85 317.8 223 69.5
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 4.4e-84 315.1 202 76.7
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 2.2e-83 312.8 208 74.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 2.2e-83 312.8 208 74.5
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.4e-82 310.1 202 72.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-81 305.1 201 75.6
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.0e-80 303.9 205 70.2
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 1.7e-80 303.1 228 67.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.0e-80 302.4 226 67.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.1e-80 301.6 213 70.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.6e-80 301.2 186 79.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 8.6e-80 300.8 200 72.0
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.1e-79 300.4 224 67.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.7e-78 295.0 221 65.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 8.1e-78 294.3 230 66.1
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.4e-77 293.5 203 67.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.1e-77 292.4 262 59.5
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 3.1e-77 292.4 236 63.6
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 5.2e-77 291.6 224 67.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 6.8e-77 291.2 192 75.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 6.8e-77 291.2 214 67.3
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.2e-76 290.4 224 67.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 8.4e-75 284.3 232 65.1
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.6e-73 280.0 221 67.4
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.5e-73 278.9 223 63.7
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 7.8e-73 277.7 208 65.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.9e-72 275.4 223 65.0
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 8.1e-70 267.7 159 83.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.8e-69 264.6 173 76.3
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.6e-68 262.7 180 72.2
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.1e-66 257.3 221 63.3
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-64 250.4 186 69.9
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-63 246.5 156 78.2
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.3e-63 245.7 201 65.2
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.3e-63 245.7 221 62.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.3e-63 245.4 224 55.8
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.8e-62 241.9 211 61.1
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 3.1e-61 239.2 214 58.4
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 6.9e-61 238.0 159 74.2
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.5e-60 236.9 209 61.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.6e-60 236.1 221 57.5
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.2e-59 233.0 224 56.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.4e-58 229.6 149 79.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.0e-56 222.6 152 75.0
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 9.0e-53 211.1 213 53.1
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.1e-50 201.4 156 66.0
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.3e-43 180.6 235 45.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.1e-42 177.6 198 54.0
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 9.3e-42 174.5 236 44.1
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.3e-39 165.6 113 74.3
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.4e-37 159.8 216 44.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.1e-37 159.5 231 42.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.1e-34 151.0 102 70.6
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.9e-34 150.2 109 68.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-33 146.4 94 74.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-30 137.5 115 65.2
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 7.7e-28 128.3 157 43.3
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.5e-27 124.8 114 59.6
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 7.2e-26 121.7 78 74.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 8.5e-19 98.2 70 62.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.4e-16 90.9 201 31.3
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 3.0e-16 89.7 74 58.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.8e-14 83.2 70 60.0
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.6e-12 76.6 105 49.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 8.8e-08 61.6 74 51.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 8.8e-08 61.6 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 6.3e-06 55.5 73 39.7


User provided reference genes

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